PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g76440.1.p | ||||||||
Common Name | BRADI_1g76440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 287aa MW: 30796.1 Da PI: 6.7189 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 3e-06 | 159 | 203 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ eL +l+P ++l+ ae+L++A ++++ Lq Bradi1g76440.1.p 159 SAAARERRKRISEKTGELSRLVPGG-----RRLNTAEMLREAGRHVRVLQ 203 56789******************96.....79**********99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.004 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.67E-7 | 154 | 206 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-9 | 155 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-7 | 157 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-7 | 159 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MALSFFHPLL RHLDAPSMSF LQDESSEVAD ALLGFVHDPA VNSRIDHFLD LNPSPPLPDD 60 DGNIRCGKIP RGAGLGNDAW LNSCSAGNGG SHRALHWSNG DGDHEQAQPA AATPDFLMPL 120 RPPPMQMAPA PLFMRGAAAV ADAKKVAGAT TNGCQSAPSA AARERRKRIS EKTGELSRLV 180 PGGRRLNTAE MLREAGRHVR VLQAQVGVLA LMRTIDIYQR QEDEEIMRAL LASGGVQERL 240 AGEGKCLVPR KLVDAMAEDI AVKSNAVLSR DLARFVDSLP VPEPWL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g76440.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661333.1 | 5e-58 | uncharacterized protein LOC101765829 | ||||
TrEMBL | I1HA57 | 0.0 | I1HA57_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G76440.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 | Representative plant | OGRP5969 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g76440.1.p |