PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g73710.1.p | ||||||||
Common Name | BRADI_1g73710, LOC100825862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 435aa MW: 47190.7 Da PI: 8.1988 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.1 | 2.2e-39 | 99 | 158 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ Bradi1g73710.1.p 99 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKSKSI 158 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 95 | 156 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-32 | 101 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.686 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 105 | 141 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MGQCRAAAGG GDCLFKLFGK TIPVPADSSG SVVDKDQQHS GSSTAEPKVQ ENIPGDSTGS 60 PTLPEVVDTD DSCAVKKSSA DQEEEQSDTA NQKEKLKKPD KILPCPRCNS MDTKFCYYNN 120 YNINQPRHFC KKCQRYWTAG GAMRNVPVGA GRRKSKSISA ASHFLQRIRA TLPGDPLCTP 180 IKTNATVLSF GSDTSTLDLT EQMKHLKDKL IPVTQIKNTD DPSVGSCAEG WAKGEEQNQM 240 NSREEVTADK STNVAQHPCM NGGTMWPFSC APSPAYFTSS VAIPFYPAAA AAAYWGYMVP 300 GAWNTPWPPQ SQSQSSSSPN AASPVSTMSS CFQSRKHPRD GDEERDTNRN GKVWVPKTIR 360 IDDADEVARS SIWSLIGING DKVGTDDGRG CKITRVFYPK DEAKTTTHRV NNSLPFLKGN 420 PAALSRSVTF QERS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g73710.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK252924 | 0.0 | AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558722.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | I1H995 | 0.0 | I1H995_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G73710.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47500.1 | 6e-64 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g73710.1.p |
Entrez Gene | 100825862 |