PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g72300.2.p
Common NameBRADI_1g72300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 343aa    MW: 39502.1 Da    PI: 9.5164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g72300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-11204249247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WTt+E+ l++++ +  G g W+ I+  + +++t+ q+ s+ qky
  Bradi1g72300.2.p 204 RFWTTDEHRLFLQGLNACGRGKWRNISMNFVTTKTPAQIASHAQKY 249
                       56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.037198254IPR017930Myb domain
SMARTSM007174.2E-9202252IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.8E-14203252IPR006447Myb domain, plants
SuperFamilySSF466894.67E-14203254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-8203251IPR009057Homeodomain-like
CDDcd001672.20E-6206250No hitNo description
PfamPF002493.4E-8206249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MARSLRDWWT RRSQVFARGV GTSAVRYPRS RVHTICCVLH TPYSSQITMD PRENQEWTSY  60
EVEEARSIIA RLNSNNCSYH GNNHDKNKKH NIMLELQAKF PWKTIKQVKD LYLDLVVEMH  120
MMQCQQKEYG CVDGKHVNIC TFHGHVKKNF GVPEEQEVSM DHKDFSFGFT SGHVGIMETM  180
KEVPMLGENK MPIHQPVVAP CARRFWTTDE HRLFLQGLNA CGRGKWRNIS MNFVTTKTPA  240
QIASHAQKYF KRIEGKGSGT QRYSIHDVEL GNNDPWKTED SSRPTKRSCM SMPTSSFLQV  300
PSTSFVTMDN MAQFKFPSLK KTTQLVQSEK HMMDSVADPW RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284291TKRSCMSM
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g72300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752587.21e-170protein REVEILLE 1
TrEMBLA0A0Q3KFN30.0A0A0Q3KFN3_BRADI; Uncharacterized protein
STRINGBRADI1G72300.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-22MYB family protein