PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48690.1.p
Common NameBRADI_1g48690, LOC100827560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 752aa    MW: 87387.7 Da    PI: 5.2113
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-1329136916100
                       EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                       + +p +    + +++e++  ++l+ +sg++W v+l    +s++  l+ GWkeF ++++++   f+vF ++g+s+f   v+vf+ks
  Bradi1g48690.1.p 291 VEIPSSLN-GY-LENESPGVVSLRGPSGNTWLVEL--AANSRGLHLAHGWKEFFNDHRIQLEYFLVFLYEGQSQF--SVRVFDKS 369
                       34444432.33.33456778***************..*********************************99999..99999985 PP
2B355.41.1e-17637731396
                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       k+lt s v ++  +v+p +f++++  k   s+++tl d++ + Wev + y   + +s++  +++GW  F+  n+L+  D++vF+  ++++ e+
  Bradi1g48690.1.p 637 KALTYSEVYTTYFMVIPHEFVQKYLPK--HSRKMTLWDPQAKPWEVSYVYwewDSCSSGAAFSAGWGAFAAYNNLEKSDVCVFEILDDDDDEY 727
                       789999999**9***********9533..5679***************98886777777*************************665555555 PP

                       EEEE CS
                B3  93 vvkv 96 
                        +kv
  Bradi1g48690.1.p 728 SIKV 731
                       5554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-19273371IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-19275371IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-15276367No hitNo description
SMARTSM010191.7E-8278369IPR003340B3 DNA binding domain
PfamPF023623.9E-11279368IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307293369IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-21628735IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20630732IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.858635735IPR003340B3 DNA binding domain
SMARTSM010192.0E-7635737IPR003340B3 DNA binding domain
CDDcd100172.36E-20637735No hitNo description
PfamPF023626.0E-15637734IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MVVPKKQNTT MDMVSNTKEV KVKEEERDNL VNDKVRGKKM EMNQKREEDN NKKDKEKKKA  60
PKPKVAKYKK NKGKNRRDKE KERGEECQRE MDERIKEQEH NERVDEEKEK KDKEEEQKKR  120
KGKEREEEKA KKDIEEEKRK TKEKERKEDW PREMEKEQRE RVDKEKAKKD NEEEQKKRKE  180
KELHEDRKRK GEQNERNKKE REEWQRETEK KEQMEIVDKE KAKKDKEEKK RKRSEEGQEK  240
EVHNDRERKE EMELEVEEDE QNERNGNEEP TKSVFPNFFK VVMPGHCTEQ VEIPSSLNGY  300
LENESPGVVS LRGPSGNTWL VELAANSRGL HLAHGWKEFF NDHRIQLEYF LVFLYEGQSQ  360
FSVRVFDKSG CEAHDAFLAR PCNDTVTNDD EGGMITNVDG MDPQEEHIGH VAAENDGGDM  420
GTNVGGTDQM EEDACSLAEE DKEDMDTNAG DTNPQEEDTG GEEPECSEEE EDERHMGSND  480
ASDTSEKNDQ DDNANSAPDT SQDDGVYHGL NTRKKRFRKI DGILAEDDRH ASKKRKVMGK  540
RCVASPHSSA SKITASGATM KVPDTTNISK SIVPRPPRFH CTLFNKSNNV PQPGEVLTKV  600
QRRPALISQR RPVTEEEKSD ALERAMRFRS PRPFTHKALT YSEVYTTYFM VIPHEFVQKY  660
LPKHSRKMTL WDPQAKPWEV SYVYWEWDSC SSGAAFSAGW GAFAAYNNLE KSDVCVFEIL  720
DDDDDEYSIK VHIHRVVLEI TPCIDPLCEG N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223232KDKEEKKRKR
2228233KKRKRS
3513535KKRFRKIDGILAEDDRHASKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752140.10.0myb-like protein X isoform X1
TrEMBLI1H0U10.0I1H0U1_BRADI; Uncharacterized protein
STRINGBRADI1G48690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-15B3 family protein