PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g48520.1.p | ||||||||
Common Name | BRADI_1g48520, LOC100824576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26133.5 Da PI: 7.8993 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.4 | 1.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e+s+ Bradi1g48520.1.p 9 KRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 93.1 | 4.9e-31 | 82 | 172 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ s +qe+ kLk ++e Lq++qR+llGedL++Ls+keL+qLe+q+e slk+iRs+K++ l+q+ el++ke++lq+ nk+Lrkk++e Bradi1g48520.1.p 82 TPETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLGPLSMKELEQLENQIEISLKHIRSTKSQQSLDQLFELKRKEQQLQDVNKDLRKKIQE 172 3344557789*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.039 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 7.19E-33 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.272 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.7E-26 | 88 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRGKVELKR IENKISRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGRLFEFSTS 60 SCMYKTLERY RNCNSNSEAT ATPETELSNY QEYLKLKTRV EFLQTTQRNL LGEDLGPLSM 120 KELEQLENQI EISLKHIRST KSQQSLDQLF ELKRKEQQLQ DVNKDLRKKI QETSAENVLH 180 MSCQDVGPSG STGHTNQANQ QELFHPSVCD PSLHIGYQAY MDHLNND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-24 | 85 | 170 | 16 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-24 | 85 | 170 | 16 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-24 | 85 | 170 | 16 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-24 | 85 | 170 | 16 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:16217607, ECO:0000269|PubMed:9085264, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g48520.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469303 | 0.0 | KF469303.1 Brachypodium distachyon MADS-box transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288306.1 | 1e-169 | MADS-box transcription factor 5-like | ||||
Swissprot | A2Y9P0 | 1e-137 | MADS5_ORYSI; MADS-box transcription factor 5 | ||||
Swissprot | Q0DEB8 | 1e-137 | MADS5_ORYSJ; MADS-box transcription factor 5 | ||||
TrEMBL | I1H0S1 | 1e-167 | I1H0S1_BRADI; MADS-box transcription factor 7 | ||||
STRING | BRADI1G48520.1 | 1e-168 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 2e-80 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g48520.1.p |
Entrez Gene | 100824576 |
Publications ? help Back to Top | |||
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