PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g48330.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 437aa    MW: 48373.5 Da    PI: 6.2508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g48330.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06183206123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y+C+ Cg++F+++ +L rH r  H
  Bradi1g48330.2.p 183 YSCGVCGRRFPTRPDLARHFRQlH 206
                       99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-4182209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-5182209No hitNo description
SMARTSM003553.4E-4183206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.006183211IPR007087Zinc finger, C2H2
PROSITE patternPS000280185206IPR007087Zinc finger, C2H2
CDDcd061671.36E-8212333No hitNo description
Gene3DG3DSA:3.40.50.10101.4E-4255322IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPRPLPSLLH SLSPILYPPS RATTQHSPWP AMPPPLSFLH LPPGPPALHP SPSFHRARHG  60
PSLRTAPQPR APAVAVSENP SPAAPTPADV EMFRGVDGVW TARTPTVVVL WDLDNKPPRG  120
PPFEAATSLR EAASLLGRVD SVSAFANRHA FTHLPAWVSA DRRDRRALDR AERAGVVAPP  180
IPYSCGVCGR RFPTRPDLAR HFRQLHERER NKKLGRLRSL KGKKRQKFRE RYISGNTKYQ  240
EAARELLTPK VGYGLDSELR RAGVHVRTVP DKPQAADQAL KRQVKHAIAC GVDWVVLVSD  300
DSDFTDTVRN ARDAALRMVV VGDGCRALGR VADIWLPWDS VQNGEVDEEM MRSGRVPGFG  360
DYEDDEEDDE EFIVDWDTSQ LDDVVDDIVT TRTKVFGATA MSAFAEEDIV DGISGLGLKE  420
DDMFWSSDDE DEDGFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g48330.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596000.0AK359600.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1099L22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312844.10.0uncharacterized protein LOC100821186
TrEMBLA0A2K2DQ950.0A0A2K2DQ95_BRADI; Uncharacterized protein
STRINGBRADI1G48330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.12e-94C2H2-like zinc finger protein