PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g47690.1.p | ||||||||
Common Name | BRADI_1g47690, LOC100832400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 295aa MW: 32462.2 Da PI: 8.0911 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.5 | 5e-32 | 119 | 175 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k Bradi1g47690.1.p 119 DGYNWRKYGQKQVKGSEFPRSYYKCTYPTCPVKRKVETTL-DGQIAEIVYNGEHNHPK 175 9***************************************.***************85 PP | |||||||
2 | WRKY | 27.1 | 8.3e-09 | 273 | 294 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +D ++WrKYGqK v+g+ fp s Bradi1g47690.1.p 273 EDAFRWRKYGQKAVNGNLFPMS 294 7****************99965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.986 | 112 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-27 | 114 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 115 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-34 | 117 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 119 | 174 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.0E-7 | 260 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 10.177 | 267 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-6 | 267 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-5 | 273 | 293 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MQSQEKITTV KPVASRPFSS FSSFSKLLKD FTTTGSTRIT SPGETAIVRR PKARRFASPP 60 SDLSTGLTAT MLQDGGSDTT HEQMVVDTEQ QAVSCDEHQT VFHNINKPIH GARNRLSYDG 120 YNWRKYGQKQ VKGSEFPRSY YKCTYPTCPV KRKVETTLDG QIAEIVYNGE HNHPKPHLPK 180 KPVSSTGTEV VIADVYDAGA ESQLGGCNGL SLIDSNVVAD TFRRCCYCFD ELGENSLVCN 240 CKGSRKEEQS NGLGANAEAA RVFQASTECE SSEDAFRWRK YGQKAVNGNL FPMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-16 | 119 | 176 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g47690.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242855 | 8e-59 | AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence. | |||
GenBank | AP014967 | 8e-59 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 8e-59 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341860 | 8e-59 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. | |||
GenBank | BX000496 | 8e-59 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000503 | 8e-59 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX072548 | 8e-59 | BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 8e-59 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227965.1 | 0.0 | WRKY transcription factor 44 | ||||
TrEMBL | I1H0G9 | 0.0 | I1H0G9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G47690.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 | Representative plant | OGRP12627 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 5e-33 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g47690.1.p |
Entrez Gene | 100832400 |