PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g47350.1.p
Common NameBRADI_1g47350, LOC100824146
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 389aa    MW: 39073.4 Da    PI: 6.1582
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g47350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12194239555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Bradi1g47350.1.p 194 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 239
                       99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.08E-13187243No hitNo description
SuperFamilySSF474597.07E-17187249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16191248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9194239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAGGGGDGGG GAQDDFFDQM LSTLPSAWGD LGAAGKSPWE LAAGAEDLSA FDESALLASR  60
LRQHQIGGGE KPVMLQLTDL QRQQGEESGG FSPLPLFTDR SPPPSAREDM DGGFKSPNNN  120
ATGGDHAMFN GFGAHGGAGA VQPPFGQGGS MSGQSFGGTA ASGGTAAPAS SGGGAAPPRQ  180
TRVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVKFLQL  240
QVKVLSMSRL GGAAGMAPLV ASMSSEANSS NTKSGSGAAA AAATANGNGN GGEKSGGGAG  300
LRVTEQQVAK MMEEDMGTAM QYLQGKGLCL MPISLASAIS SATTTTGASP ASLLARPPPM  360
RPSANGAAGA GDDAVTRPVK VDANGGKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g47350.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059199e-44AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149629e-44AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126149e-44CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560994.10.0transcription factor bHLH82
SwissprotQ9ZUG91e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLI1H0C60.0I1H0C6_BRADI; Uncharacterized protein
STRINGBRADI1G47350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-48LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]