PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g46675.1.p | ||||||||
Common Name | BRADI_1g46675 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18893.1 Da PI: 10.0236 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.9 | 1.1e-12 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ +r t kR+ g+ KK +EL +LCd+ ++++++ ++ Bradi1g46675.1.p 11 IVNNAKRRATMKKRLPGLVKKISELAILCDIPACLVVYRPDE 52 779999*******************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.241 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-9 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.01E-20 | 4 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.90E-19 | 5 | 85 | No hit | No description |
Pfam | PF00319 | 1.1E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MPHGRVKLQW IVNNAKRRAT MKKRLPGLVK KISELAILCD IPACLVVYRP DEEQPAVWPS 60 TRETTNVVQK YYDLPESKKL KKMLDVEGFQ QQQVDKEKAE LFNAHRDNCD QEINLIMKQF 120 IAHRRHSFED LTTEVLIHLK LKVKESLKAI DTRLQKIHLG GI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g46675.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469351 | 1e-133 | KF469351.1 Brachypodium distachyon MADS-box transcription factor 57 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312442.1 | 1e-118 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0Q3K3Y7 | 1e-116 | A0A0Q3K3Y7_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g46675.1.p |