PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g43840.1.p
Common NameBRADI_1g43840, LOC100834693
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 482aa    MW: 53971.7 Da    PI: 4.4261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g43840.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.22e-33581971128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 
                       lp+G++F+P+d+el+++ L+k+ ++       ++++   ++e  +i++++P++Lp  +k++ +  +fF+++ k+y+tg+rk+r ++     + 
  Bradi1g43840.1.p  58 LPKGVKFDPSDQELLSHLLAKHDKAGAephpfIDEFIPtVEEDdGICYTHPQKLP-GLKQDGSVSHFFHRTYKAYNTGTRKRRRINtgdlaDV 149
                       799************988877644444555443332322444435**********.667788899******************7552344467 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+k+v++ +g++ g+kk++v+y  + +  k++kt+Wvmh+y+l
  Bradi1g43840.1.p 150 RWHKTGKTKPVMV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 197
                       8************.999***********6644666777*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3843216IPR003441NAC domain
PROSITE profilePS5100531.53458216IPR003441NAC domain
PfamPF023657.6E-1559197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MTGTSWLIDS QRIASKIKNV SGSMDLSKQK WVSNPTKECP RCSHIIDNSD VVHQWPGLPK  60
GVKFDPSDQE LLSHLLAKHD KAGAEPHPFI DEFIPTVEED DGICYTHPQK LPGLKQDGSV  120
SHFFHRTYKA YNTGTRKRRR INTGDLADVR WHKTGKTKPV MVDGKHLGCK KIMVLYMSTV  180
KGGKPKKTNW VMHQYHLGTG EDEQNGEYVV SKLFFQQQFK PGEKYAEELT TADALETIAA  240
EADLPDLPEP ALDEQGEEHI SSITNQEVLH NNEHTADREA LPYQQFKPGE KNAQELTTAD  300
ALETIAAEED LPDLPEPALD EREEDICSIT NQEVLHNNEH TADPEALPYQ ESRNCDITME  360
EKAAEEDAAY PSSEKPEDGD NPSSQDPKWW DGESQFLLTS QQLAESLPCL DEFLQSQTSG  420
DEQDTIKPKL ADYANLPVED LKQDLEKCHE LGLSDADFRL SQIEFSQDSC TAAWAGGNML  480
D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139RKRRR
2136140KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g43840.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7291471e-109KP729147.1 Stipa purpurea microsatellite ZH4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227769.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLI1GZ500.0I1GZ50_BRADI; Uncharacterized protein
STRINGBRADI1G43840.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Representative plantOGRP82641016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-132NAC family protein