PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g40407.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 516aa    MW: 56637.9 Da    PI: 7.6948
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g40407.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.75.3e-1468106241
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N+ e
  Bradi1g40407.4.p  68 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNRVE 106
                       689*************************.********987 PP
2TCR50.34.9e-16179218140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Bradi1g40407.4.p 179 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 218
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.7E-1367107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.32468219IPR005172CRC domain
PfamPF036389.4E-1169104IPR005172CRC domain
SMARTSM011146.0E-19179220IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12182217IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEPEEQQMVQ PPVSASAPAA ELKVPSHQPP PKPAASTQPA MPVPRPWPVA FTPMKPMVEV  60
KSGTPQKRKK QCNCKNSHCL KLYCECFAAG LYCDGCNCKQ CGNRVENEKA RQEAINNTKQ  120
RNPKAFQPKI ENVSNTLSVR KVDYRHISWR KSIIGTCCPS TMPFGSILGP DAGVPSFPKH  180
NKGCHCKKSG CLKKYCECFQ ANILCSKNCK CMDCKNFEGS EELQAIIQGY NASDRNNIQQ  240
ATNVTLNGPI GSSGHKCSPA CRRHPDDPLG SEANHVDASQ VASSTGLEGC IGNYHSKSKM  300
FYRSPLAHTI HPTDVNDLAN HLVIVCRKAT EAFLTIADHK VEIDVERTSC TKTDLNNDKM  360
KNQEVQKAVV RQPDEATYID HRNVGDLESP CSNSQEDSRP ASPGTQALMC DEQGTAFGTD  420
YRSSFPMALH DQDTSELNGV QEKTVLTGFR DYLRLVITRG KINEGNILSE SAMELEDQRH  480
QSVSTNLLPL KAVEKPKSPD DSENPKASEP SSSNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-226922811132Protein lin-54 homolog
5fd3_B1e-226922811132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g40407.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362569e-57CT836256.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111J17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753297.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A2K2DNM40.0A0A2K2DNM4_BRADI; Uncharacterized protein
STRINGBRADI1G40407.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-85Tesmin/TSO1-like CXC domain-containing protein