PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g38140.2.p | ||||||||
Common Name | BRADI_1g38140, LOC100822722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 265aa MW: 28332.7 Da PI: 6.6937 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 89 | 5.9e-28 | 13 | 113 | 2 | 99 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE--...-SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvk...deekkskskekiweFkhksFkkgkk 91 F+ k+y+++ed+ ++ +i w +nsfvv d+ f++++Lp++Fkh+nf+SFvRQLn+Y + ++ ++e+ +k +++ weF+h sF +g++ Bradi1g38140.2.p 13 FVWKTYRMVEDPGTDGVIGWGPANNSFVVADPFVFSQTLLPTHFKHNNFSSFVRQLNTYVSQLLHfllKSEGFRKVDPDRWEFAHGSFLRGQT 105 9********************999***********************************8654441104444444469*************** PP XXXXXXXX CS HSF_DNA-bind 92 ellekikr 99 +ll++i r Bradi1g38140.2.p 106 HLLRNIVR 113 ******88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.2E-44 | 9 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.43E-31 | 10 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.6E-35 | 10 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.2E-13 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.8E-26 | 13 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-13 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.2E-13 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MSVGGGGAAA APFVWKTYRM VEDPGTDGVI GWGPANNSFV VADPFVFSQT LLPTHFKHNN 60 FSSFVRQLNT YVSQLLHFLL KSEGFRKVDP DRWEFAHGSF LRGQTHLLRN IVRGGGGGSK 120 RKDAAAADAT DQDMTMVATE VVRLKKEQRT IDDRVAAMWR RVQETERRPK QMLAFLLTVV 180 GDRDTLLRLV SGNDGAGDEE PVEGGEKRAR LRLDGPEAAD FAGFYGVGGD AFVNQLAVDV 240 AAGAGSSVGG AAGSSFGFGG DSGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 4 | 113 | 19 | 128 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 4 | 113 | 19 | 128 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 4 | 113 | 19 | 128 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g38140.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248538 | 3e-95 | AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence. | |||
GenBank | AK354435 | 3e-95 | AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06. | |||
GenBank | AK358136 | 3e-95 | AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14. | |||
GenBank | AK370399 | 3e-95 | AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13. | |||
GenBank | HM446041 | 3e-95 | HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755794.1 | 0.0 | heat stress transcription factor C-2b isoform X1 | ||||
Swissprot | Q0DBL6 | 1e-104 | HFC2B_ORYSJ; Heat stress transcription factor C-2b | ||||
TrEMBL | A0A0Q3H586 | 0.0 | A0A0Q3H586_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G38140.1 | 1e-158 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-56 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g38140.2.p |
Entrez Gene | 100822722 |