PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g36067.1.p
Common NameBRADI_1g36067, LOC100825670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 377aa    MW: 41039 Da    PI: 8.1952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g36067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05185204120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++Cp C+k+F+r  n++ H+
  Bradi1g36067.1.p 185 FSCPVCHKTFNRYNNMQMHM 204
                       89*****************9 PP
2zf-C2H214.20.00013269291123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +Cgk F  + + ++H +++
  Bradi1g36067.1.p 269 FMCRKCGKAFAVRGDWRTHEKNC 291
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5181207No hitNo description
SMARTSM003550.09185207IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-6185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.993185212IPR007087Zinc finger, C2H2
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
SuperFamilySSF576672.17E-6252289No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5265289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549269289IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808269289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGDPYTNFLR GYSLRYSSNP AAAAAASSSF PSYSSYIHPH AAAPSSPPIR EALPLLSLTP  60
SSPHPGHHDQ DHKILMTSCS NQQAEAADHQ AAAREVTVAL HIGLPSPSHS DPAAAAAAAG  120
DHQKEEVAAA GSLKQQEQQE EEGEEEEEGT MALGVGCASL GIGRLTKGQY WIPTPSQILI  180
GPTQFSCPVC HKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCAAGCRN  240
NIDHPRSRPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN CGKLWYCACG  300
SDFKHKRSLK DHIRAFGRGH APCGIDCFDD VLADDDEPSS EVDHNVTTTA GSRHWKAASG  360
NNLDRIVSRA TTGLGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g36067.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3698740.0AK369874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227506.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-131ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1GXB80.0I1GXB8_BRADI; Uncharacterized protein
STRINGBRADI1G36067.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]