PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g35588.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 335aa MW: 37509.6 Da PI: 10.6882 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.6e-16 | 78 | 169 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +k l ++d l++ +++p kf++eh ++ ++s+t ++ ++ ++ W+v+l +++++ +++++GW +F a++L +g ++vF+++g++ f Bradi1g35588.2.p 78 IKLL-QPDDLEK--MRVPDKFVQEHlteTESCPSSQTAIILSPLSKFWRVEL--ERGQSDVLFKGGWARFLMAHDLSQGNILVFRYEGNMVF- 164 4444.6777766..79*********99855667999****************..**********************************9999. PP .EEEEE CS B3 92 lvvkvf 97 v vf Bradi1g35588.2.p 165 -SVEVF 169 .66655 PP | |||||||
2 | B3 | 47 | 4.8e-15 | 243 | 325 | 2 | 86 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 fk+ ++ ++lks l + ++f++++g++++++++l+ s rsW+v ++ + + +y+ + Wk+F+++n+LkegD ++F ++ Bradi1g35588.2.p 243 FKKQINRYSLKSF-LAVKRTFCSSIGLVSACTIKLQTSMDSTRSWSVPFN-TANTYGYITGPRWKRFCRDNKLKEGDLCTFNIVK 325 5777899999998.999***********99977777666888*******4.4444569999********************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 73 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.21 | 74 | 172 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-20 | 74 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.62E-16 | 75 | 169 | No hit | No description |
SMART | SM01019 | 8.2E-12 | 77 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-13 | 78 | 168 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.8E-17 | 239 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-14 | 239 | 333 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 241 | 334 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.62E-7 | 241 | 321 | No hit | No description |
SMART | SM01019 | 0.0024 | 243 | 334 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-11 | 244 | 325 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAHSARRLRP KFAAPSLSWS CLHKLLAAAH GVGEGWSVVL RRERRGVATV AAFDPACCLA 60 RLCTPRPGVM FKNRPRFIKL LQPDDLEKMR VPDKFVQEHL TETESCPSSQ TAIILSPLSK 120 FWRVELERGQ SDVLFKGGWA RFLMAHDLSQ GNILVFRYEG NMVFSVEVFL QNGCLKEYTR 180 AGALILTDDP NGPRTGTPQS GNELVVATAS KKRKYTKRVV SPNSANKVGS QCKLANTLRK 240 PSFKKQINRY SLKSFLAVKR TFCSSIGLVS ACTIKLQTSM DSTRSWSVPF NTANTYGYIT 300 GPRWKRFCRD NKLKEGDLCT FNIVKTTVWH VVIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g35588.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229793.1 | 0.0 | putative B3 domain-containing protein Os06g0632500 | ||||
Swissprot | Q67VL7 | 1e-111 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A2K2DMV4 | 0.0 | A0A2K2DMV4_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35587.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 | Representative plant | OGRP10106 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 6e-14 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g35588.2.p |