PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g25370.1.p | ||||||||
Common Name | BRADI_1g25370, LOC100829571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 572aa MW: 64592.6 Da PI: 6.796 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422.2 | 4.2e-129 | 202 | 570 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cAea+s++ +e+ +l+++ + ++s +g+p+qRl ay++e+L ar +s+ ++y+al++++ + s+e l+++k++++++P++kf+ Bradi1g25370.1.p 202 KQLLTKCAEALSEDRTEEFLKLVQEARGIVSINGEPIQRLGAYLLEGLVARHGNSGRNIYRALRCRKPE---SKELLSYMKILYNICPYFKFG 291 689*****************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+ + e le +g+ L+ + +e+++p+ef++l Bradi1g25370.1.p 292 YMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLKGMSKEFNIPLEFTPL-PVY 383 ********************************************************999999**************************6.777 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++F+ rf+e+++yysa+f+s++a+lpr+ Bradi1g25370.1.p 384 ATQVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFMMRFAETMDYYSAMFESIDANLPRD 476 88999**************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+S Bradi1g25370.1.p 477 NKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKKRKLISAS 568 ****************************************************************999.55*********************** PP GRAS 372 aW 373 aW Bradi1g25370.1.p 569 AW 570 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.012 | 175 | 552 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-126 | 202 | 570 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MDLHQLLKYR LTGANVLYEI PTENNLTNSS WPASPLKLEY NNSPYTPLST QLECDNLSAL 60 SNTPDNQSST ETISAQPISP LEADSSYIQP GSHLRENIQV RADPLYARSR HNMQHALREI 120 ETVLMAPDAD DATTSAKHEF EETKPAQLMR QRSRTWSHES RQPLPGVVRP QFASGGYPMA 180 SYEFRPEKRQ RELRDDPQII VKQLLTKCAE ALSEDRTEEF LKLVQEARGI VSINGEPIQR 240 LGAYLLEGLV ARHGNSGRNI YRALRCRKPE SKELLSYMKI LYNICPYFKF GYMAANGAIA 300 EALRSEDNIH IIDFQIAQGT QWITLIQALA ARPGGPPHVR ITGIDDPVSE YARGEGLEIV 360 GNMLKGMSKE FNIPLEFTPL PVYATQVTKE MLEIRPGEAL AVNFTLQLHH TPDESVDVNN 420 PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FMMRFAETMD YYSAMFESID ANLPRDNKER 480 ISVEQHCLAK DIVNIIACEG KDRVERHELL GKWKSRLTMA GFKPYPLSSY VNSVIKKLLA 540 CYSDKYTLEE KDGAMLLGWK KRKLISASAW H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-71 | 185 | 570 | 3 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g25370.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359701 | 0.0 | AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562960.1 | 0.0 | chitin-inducible gibberellin-responsive protein 1 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | I1GTP0 | 0.0 | I1GTP0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G25370.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10631 | 36 | 43 | Representative plant | OGRP8948 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g25370.1.p |
Entrez Gene | 100829571 |
Publications ? help Back to Top | |||
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