PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g25370.1.p
Common NameBRADI_1g25370, LOC100829571
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 572aa    MW: 64592.6 Da    PI: 6.796
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g25370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.24.2e-1292025702373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s+ ++y+al++++ +   s+e l+++k++++++P++kf+
  Bradi1g25370.1.p 202 KQLLTKCAEALSEDRTEEFLKLVQEARGIVSINGEPIQRLGAYLLEGLVARHGNSGRNIYRALRCRKPE---SKELLSYMKILYNICPYFKFG 291
                       689*****************************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+ + +e+++p+ef++l    
  Bradi1g25370.1.p 292 YMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLKGMSKEFNIPLEFTPL-PVY 383
                       ********************************************************999999**************************6.777 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++F+ rf+e+++yysa+f+s++a+lpr+
  Bradi1g25370.1.p 384 ATQVTKEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFMMRFAETMDYYSAMFESIDANLPRD 476
                       88999**************************************************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       ++eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++ee++g+++lgWk+r+L+s+S
  Bradi1g25370.1.p 477 NKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLEEKDGAMLLGWKKRKLISAS 568
                       ****************************************************************999.55*********************** PP

              GRAS 372 aW 373
                       aW
  Bradi1g25370.1.p 569 AW 570
                       ** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.012175552IPR005202Transcription factor GRAS
PfamPF035141.5E-126202570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDLHQLLKYR LTGANVLYEI PTENNLTNSS WPASPLKLEY NNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYIQP GSHLRENIQV RADPLYARSR HNMQHALREI  120
ETVLMAPDAD DATTSAKHEF EETKPAQLMR QRSRTWSHES RQPLPGVVRP QFASGGYPMA  180
SYEFRPEKRQ RELRDDPQII VKQLLTKCAE ALSEDRTEEF LKLVQEARGI VSINGEPIQR  240
LGAYLLEGLV ARHGNSGRNI YRALRCRKPE SKELLSYMKI LYNICPYFKF GYMAANGAIA  300
EALRSEDNIH IIDFQIAQGT QWITLIQALA ARPGGPPHVR ITGIDDPVSE YARGEGLEIV  360
GNMLKGMSKE FNIPLEFTPL PVYATQVTKE MLEIRPGEAL AVNFTLQLHH TPDESVDVNN  420
PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FMMRFAETMD YYSAMFESID ANLPRDNKER  480
ISVEQHCLAK DIVNIIACEG KDRVERHELL GKWKSRLTMA GFKPYPLSSY VNSVIKKLLA  540
CYSDKYTLEE KDGAMLLGWK KRKLISASAW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-711855703378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g25370.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562960.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLI1GTP00.0I1GTP0_BRADI; Uncharacterized protein
STRINGBRADI1G25370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]