PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g25300.1.p
Common NameBRADI_1g25300
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 258aa    MW: 29305.6 Da    PI: 8.3076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g25300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.7e-181050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ri++   r +tf kRr g++KKA+EL +LC+ +++vi++++
  Bradi1g25300.1.p 10 RIQDPAARRTTFRKRRDGLMKKASELATLCNLKACVIVYGE 50
                      7999999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.105150IPR002100Transcription factor, MADS-box
CDDcd002662.07E-25282No hitNo description
SuperFamilySSF554551.31E-24394IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-171050IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MARRKVNLRR IQDPAARRTT FRKRRDGLMK KASELATLCN LKACVIVYGE GEAQPHVWPS  60
VSEAVPILRR YKDTPDLERY KKTMSQEGFL RQRVDKLREM TEKLQRENHE RQTMCLLHKA  120
MLGKLPTSMD LTIEEVTSVG WMAQNYLKSI GYRIAELRGQ ASLQAPPATS IPSCNDMMTK  180
GMGEPSLEEY LQMPQHEMWI DNMRVQGEDL SAGLYSDNGA GPSTTHLSDE DLISWAQGFD  240
FDASSSFFTP MKMYSSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVNLRRIQDPAARRTTFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g25300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560112.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3RS280.0A0A0Q3RS28_BRADI; Uncharacterized protein
STRINGEMT028023e-57(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-27M-type_MADS family protein