PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g25297.2.p
Common NameBRADI_1g25297
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27990.2 Da    PI: 8.3135
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g25297.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.2e-171050242
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ri +   r +tf kRr g++KKA+EL +LC+ +++vi++++
  Bradi1g25297.2.p 10 RIPDAGARRTTFRKRRDGLMKKASELATLCNLKACVIVYGE 50
                      6777888********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.614150IPR002100Transcription factor, MADS-box
CDDcd002661.23E-24285No hitNo description
PRINTSPR004045.0E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-21394IPR002100Transcription factor, MADS-box
PfamPF003192.2E-161050IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MARKKVSLRR IPDAGARRTT FRKRRDGLMK KASELATLCN LKACVIVYGE GEAQPHVWPC  60
VAEAVPILHR FKVMPDVEQY KKTVNQEGFL RQRVDKLREQ NQKMQRENHE RHTMCLLHKA  120
MLGQLPGLMG LTIEEVTSVG WMAKNYRKSI GDRIAELSRQ AGLQAPPATY IPSNYMMTMG  180
DPSREEYLQM PQQEMWIDNM RIEGEDLNVL PYSDNGAGPS TTDLGGDLIS WAEGFDLDAS  240
SSSFTPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVSLRRIPDAGARRTTFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g25297.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313046.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A2K2DL160.0A0A2K2DL16_BRADI; Uncharacterized protein
STRINGEMT028028e-61(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-28M-type_MADS family protein