PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g17410.1.p

Common Name

BRADI_1g17410, LOC100824853

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 444aa MW: 47670.5 Da PI: 8.0819

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g17410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Bradi1g17410.1.p 66 PDKILPCPRCKSMDTKFCYYNNYNVHQPRHFCKGCQRYWTAGGSMRNIPVGAGRRKSKSSS 126 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	52	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.5E-32	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MRITKENPST QQEFDLGQIN KSSLNNSTEC ENQAPNGDER TEQGSKSEAA KTEDDGSSRD 60 KVLKKPDKIL PCPRCKSMDT KFCYYNNYNV HQPRHFCKGC QRYWTAGGSM RNIPVGAGRR 120 KSKSSSSNCR SILTPGSSLA APVGDASLIP FSVKGNEPVV TFGSDAPLCN SMASSLRVEE 180 QNKISNPAST AHPISGKNLT CPPPTTISDS QDTESVKGTV SGHQNGLAGD CNGVTPVHPI 240 PCFPGPPFMY PWNPAWNGIA AMATPICPAQ TESVKSSENG NGVNVQWNLP PMVPVPGFCG 300 PPIPFPLMPP SVWPFVSPWP NGAWSAPWLG PGYSMPAAPP TSSITCSDSA SPVLGKHPRD 360 SNLHGDEKSE KSLWIPKTLR IHDPDEAAKS SIWTTLGIEP GNRGMFRPFQ SKSGSKEQMS 420 DAARVMQANP AAQSRFQSFQ ETT*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MRITKENPST QQEFDLGQIN KSSLNNSTEC ENQAPNGDER TEQGSKSEAA KTEDDGSSRD  60
KVLKKPDKIL PCPRCKSMDT KFCYYNNYNV HQPRHFCKGC QRYWTAGGSM RNIPVGAGRR  120
KSKSSSSNCR SILTPGSSLA APVGDASLIP FSVKGNEPVV TFGSDAPLCN SMASSLRVEE  180
QNKISNPAST AHPISGKNLT CPPPTTISDS QDTESVKGTV SGHQNGLAGD CNGVTPVHPI  240
PCFPGPPFMY PWNPAWNGIA AMATPICPAQ TESVKSSENG NGVNVQWNLP PMVPVPGFCG  300
PPIPFPLMPP SVWPFVSPWP NGAWSAPWLG PGYSMPAAPP TSSITCSDSA SPVLGKHPRD  360
SNLHGDEKSE KSLWIPKTLR IHDPDEAAKS SIWTTLGIEP GNRGMFRPFQ SKSGSKEQMS  420
DAARVMQANP AAQSRFQSFQ ETT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g17410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233788.1	0.0	cyclic dof factor 1
Refseq	XP_024313586.1	0.0	cyclic dof factor 1
TrEMBL	I1GR16	0.0	I1GR16_BRADI; Uncharacterized protein
STRING	BRADI1G17410.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-72	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Bradi1g17410.1.p
Entrez Gene	100824853