PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13680.1.p | ||||||||
Common Name | BRADI_1g13680, LOC100827854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YA | ||||||||
Protein Properties | Length: 343aa MW: 36570.1 Da PI: 9.7226 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 97.9 | 1e-30 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh+hA+rR+RgsgGrF Bradi1g13680.1.p 172 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGSGGRF 228 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-33 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.225 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-27 | 174 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.1E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.1E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MMSFKSPDGF GQVAAVTQGS HGGGAPVPWW AVSQLLYGEP AALSSPEAEA HRNGQFQGVP 60 RAQGILDPAP APPAKTAQPP AKSGAPEVLK FSVFQGNLES GGKGDKTQEH STTIALQSPL 120 PEYNSRFEFG PGQSMVSSNY PGADQCYGLL TTYTMKSMPG GRVLLPLNAP ADAPIYVNAK 180 QYEGILRRRR ARAKVERENQ LVKGRKPYLH ESRHRHAMRR ARGSGGRFLN TKKEGNGKAA 240 LGGGGSKRTD CTPPARLATS PNSVIPQSQL GNPHSRSSIS SLSGSEVSSM YDHEDVDHYN 300 SIEHLRTPFF TPLPIIMDGE HGGAAPFKWA TAADGCCELL KA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-18 | 172 | 234 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 221 | RHRHAMRRAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13680.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003561845.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | I1GQ01 | 0.0 | I1GQ01_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13680.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 | Representative plant | OGRP5136 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 8e-26 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13680.1.p |
Entrez Gene | 100827854 |