PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g12900.1.p

Common Name

BRADI_1g12900, LOC104581985

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 342aa MW: 37200.6 Da PI: 8.488

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g12900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.3e-20	46	124	2	81
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt e+++Liea+++++++ + + ++W++v +++++ g++rs++qC+++w+nl ++ykk++++e+++ + +ss +++ Bradi1g12900.1.p 46 WTLPETMVLIEAKKRVHSERHPADQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAHEQQH-AAASSYWAM 124 *********************************************************************9.555557765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.851	38	102	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.1E-5	40	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.1E-5	41	107	IPR009057	Homeodomain-like
Pfam	PF13837	1.1E-13	44	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDMKQQGSAG VMERSGQQGD QDAGRNLSAA GAMTLATVRE YRRGNWTLPE TMVLIEAKKR 60 VHSERHPADQ GLARWRWVED YCWRAGCRRS QNQCNDRWDN LMRDYKKVRA HEQQHAAASS 120 YWAMARAERK ERCLPSNLLR EIYEAMGEIV ESRRRLSCYG GSGSGSGVLF LGAPLTATNV 180 GADIPAMQAS PLAQVPPPRP FEQGTHCSAS ESPERKRLRQ SLDGQPRSST PAAASASAGI 240 HHQEAQPLQE DDESSGEDED ALGGAIGRGA AILSGALESR EAAEERRHRE LMAVEERRSV 300 ARQARREAGE QCVAGLAAAV SQLAGSMFAL AAKRKGPAAP K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDMKQQGSAG VMERSGQQGD QDAGRNLSAA GAMTLATVRE YRRGNWTLPE TMVLIEAKKR  60
VHSERHPADQ GLARWRWVED YCWRAGCRRS QNQCNDRWDN LMRDYKKVRA HEQQHAAASS  120
YWAMARAERK ERCLPSNLLR EIYEAMGEIV ESRRRLSCYG GSGSGSGVLF LGAPLTATNV  180
GADIPAMQAS PLAQVPPPRP FEQGTHCSAS ESPERKRLRQ SLDGQPRSST PAAASASAGI  240
HHQEAQPLQE DDESSGEDED ALGGAIGRGA AILSGALESR EAAEERRHRE LMAVEERRSV  300
ARQARREAGE QCVAGLAAAV SQLAGSMFAL AAKRKGPAAP K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g12900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT083602	3e-71	BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229516.1	0.0	trihelix transcription factor ASR3
TrEMBL	I1GPQ8	0.0	I1GPQ8_BRADI; Uncharacterized protein
STRING	BRADI1G12900.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-37	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bradi1g12900.1.p
Entrez Gene	104581985