PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g01801.1.p | ||||||||
Common Name | BRADI_1g01801, LOC104581931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 28576 Da PI: 7.5024 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.5 | 2e-17 | 2 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksg 81 ++G+ F P+d++lvv++L+++++g + + ++++++d+y++ P dL + + +++ wyfFs++++ ++ ++ r+ Bradi1g01801.1.p 2 AAGVVFTPSDHDLVVHFLRPRIAGADvFGRGRFFHDADVYSAAPADLVHgrdhapgtnkldSKGMDRSTWYFFSPAQRLQT---KSGRVGG-- 89 68************************5444456**************7457888988865322225569*******99875...5666533.. PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 + +g +k+vl+++g+ vg + L f +++ ge + W+m ey++ Bradi1g01801.1.p 90 --RRQGGEKPVLDSDGRRVGYMRKLSFLIKKTMPGEpmtRVGWCMTEYEI 137 ..68999********************965555444334899******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.962 | 1 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-12 | 3 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-25 | 3 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MAAGVVFTPS DHDLVVHFLR PRIAGADVFG RGRFFHDADV YSAAPADLVH GRDHAPGTNK 60 LDSKGMDRST WYFFSPAQRL QTKSGRVGGR RQGGEKPVLD SDGRRVGYMR KLSFLIKKTM 120 PGEPMTRVGW CMTEYEIDGD EDRLVLCKVY RSRSRSKNTE TASMVAGSKK RKAADDDELY 180 ALGVYAGAAD AANQHKNVCR RQEMPPRIQE IETMGGAEQV RNPSERAEED DGRAGGGRGC 240 DEDDGRFECK LEELLGGGV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g01801.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229408.1 | 0.0 | NAC domain-containing protein 72 | ||||
TrEMBL | A0A0Q3GNX3 | 0.0 | A0A0Q3GNX3_BRADI; Uncharacterized protein | ||||
STRING | EMT05147 | 4e-29 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 | Representative plant | OGRP11899 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-12 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g01801.1.p |
Entrez Gene | 104581931 |