PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.7867s0363.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 683aa MW: 76074.8 Da PI: 6.5147 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 44 | 95 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q++eLe++Fe+n+ p++++r eL ++l+L+ +qVk+WFqN+R++ k Bostr.7867s0363.1.p 44 HRHTDYQIQELENFFENNPLPTEDQRYELGQRLNLEAKQVKFWFQNKRTQVK 95 579*********************************************9876 PP | |||||||
2 | START | 174.2 | 8.2e-55 | 214 | 432 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 la++a++el+ + + ++p+W+ + s+++++++ f + + +ea+r++g+v+m++ +l ++l+d++ +W +a a+ Bostr.7867s0363.1.p 214 LANTAMKELIVLGEMDCPFWTIDLrskeVSLIYEKYRGVFNNNIKppgCVVEASRDIGLVPMTSSTLAKTLMDTG-KWVDVFAsivpVAS 302 6899********************999999**********77776******************************.*******9999*** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 t++vi++g g lq+++ae+q +splvp R ++f+Ry+++l+ g wv+vd v++ ++p+ ++ +++lpSg++ie+++ng+sk Bostr.7867s0363.1.p 303 THKVIRTGtgggksGSLQQIQAEFQIISPLVPmRQVTFLRYCKELRHGLWVVVD--VTPAEYPT-FLPYGASNRLPSGLIIEDMANGYSK 389 ******************************************************..********.8************************ PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+e+++++++++h+l+++l++sg+ gak+w+atlqr+ce+ Bostr.7867s0363.1.p 390 VTWIEQAEYNENHIHQLYQPLIGSGIGLGAKRWLATLQRYCES 432 *****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-18 | 27 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 30 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 37 | 97 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 38 | 101 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.06E-15 | 41 | 95 | No hit | No description |
Pfam | PF00046 | 4.8E-16 | 44 | 95 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 36.389 | 204 | 435 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.47E-23 | 207 | 432 | No hit | No description |
CDD | cd08875 | 2.46E-88 | 208 | 431 | No hit | No description |
SMART | SM00234 | 4.5E-51 | 213 | 432 | IPR002913 | START domain |
Pfam | PF01852 | 7.7E-51 | 214 | 432 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.15E-12 | 455 | 645 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006349 | Biological Process | regulation of gene expression by genetic imprinting | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MNGQGDFDEF KYIPDPNLGR AEDEESDIMS CDNDRDGGRM RRSHRHTDYQ IQELENFFEN 60 NPLPTEDQRY ELGQRLNLEA KQVKFWFQNK RTQVKINRER LQNRALIEDH DSLLGAQEQL 120 RCAMLRSSCN ICGRATNCGD VDYEVQKLMV ENIRLKREID PYSSFLCDPV QVQVSPPEPV 180 PSSSSNPGRN ATPQLDLGCG TTSAKKERSK FLDLANTAMK ELIVLGEMDC PFWTIDLRSK 240 EVSLIYEKYR GVFNNNIKPP GCVVEASRDI GLVPMTSSTL AKTLMDTGKW VDVFASIVPV 300 ASTHKVIRTG TGGGKSGSLQ QIQAEFQIIS PLVPMRQVTF LRYCKELRHG LWVVVDVTPA 360 EYPTFLPYGA SNRLPSGLII EDMANGYSKV TWIEQAEYNE NHIHQLYQPL IGSGIGLGAK 420 RWLATLQRYC ESLLTLSSTN LGEISPGLSA KGATELVKLV QRMTLSYYKG ITGSTVAKWE 480 IIQVENVAQN MILMTRKNLN EPGEHTGIVL SAATSVWFPV NQQTLFAFLS HPSFRHEWDI 540 LTNNTSMEET IRIQKAKRHG NIISLLRIIG NGMLVLQEVW NDASGAVLVY APVETSSIEP 600 VKRSENSDSV QLLPSGFSIL PDGVTDHKGK SKTGGGCLLT LGLQILVSSN PTAELTQDSV 660 KIVEELMVHT IGKIKSALHI QT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of time of flowering through the photoperiod flowering pathway. May repress FT. {ECO:0000269|PubMed:17189287}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.7867s0363.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB367817 | 0.0 | AB367817.1 Turritis glabra FWA mRNA for homeodomain-containing transcription factor FWA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567722.1 | 0.0 | FLOWERING WAGENINGEN | ||||
Swissprot | Q9FVI6 | 0.0 | FWA_ARATH; Homeobox-leucine zipper protein HDG6 | ||||
TrEMBL | B5BQ03 | 0.0 | B5BQ03_TURGL; Homeodomain-containing transcription factor FWA | ||||
STRING | Bostr.7867s0363.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20953 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25530.1 | 0.0 | FLOWERING WAGENINGEN |
Link Out ? help Back to Top | |
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Phytozome | Bostr.7867s0363.1.p |