PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3751s0039.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 484aa MW: 55464.1 Da PI: 8.025

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3751s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.3	4.6e-24	5	54	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r++++s +++++s+R+++++KKA+ELS+LC++ v+vi+++++g+l+++++ Bostr.3751s0039.1.p 5 RSSSYSLASTSLSNRLKTVFKKASELSILCEVVVCVIYYGPDGELKTWPK 54 89**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.063	1	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0019	1	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-13	13	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-13	14	88	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MRSSRSSSYS LASTSLSNRL KTVFKKASEL SILCEVVVCV IYYGPDGELK TWPKEKEKVK 60 DLALRYSQLT EALRRKKSVN LYGVLNKKKI KYSTEVRQSS NPNPTIQSFT GNYLNLRLHT 120 TQKSIFQARI DRSRPLIDRS RILINEPGQH GTRLLRHPNT SLYRKKCNNF NYKERLGIRM 180 LQYPISDHYS SDQVSQLIQS LELNFSKFQE RLRFVESQKH KETKLDHQSL ASYSLNHQQH 240 QHLQTQSMNP SQFSLIMYNH GDNTFSQIPV SASNFNQNFS ALLQESELKN HLMKLEICGY 300 DQNMCMSDIT NNNFQHPCFS DKEAVQESMN NFGLNQLMLE DFYGCDQNMC MGNINSNNFQ 360 HPCVSNTEHY SAVQESMNNI RLNQLMQHEL YGYDQNMCTS DITNSSVPDP GLSNTVSYGF 420 CSDSQDSCGN NMVGNTSFSQ NLSDMSSNYV FNFDESSLFQ TSTLPSLSTI PNSYLLSENS 480 RFL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MRSSRSSSYS LASTSLSNRL KTVFKKASEL SILCEVVVCV IYYGPDGELK TWPKEKEKVK  60
DLALRYSQLT EALRRKKSVN LYGVLNKKKI KYSTEVRQSS NPNPTIQSFT GNYLNLRLHT  120
TQKSIFQARI DRSRPLIDRS RILINEPGQH GTRLLRHPNT SLYRKKCNNF NYKERLGIRM  180
LQYPISDHYS SDQVSQLIQS LELNFSKFQE RLRFVESQKH KETKLDHQSL ASYSLNHQQH  240
QHLQTQSMNP SQFSLIMYNH GDNTFSQIPV SASNFNQNFS ALLQESELKN HLMKLEICGY  300
DQNMCMSDIT NNNFQHPCFS DKEAVQESMN NFGLNQLMLE DFYGCDQNMC MGNINSNNFQ  360
HPCVSNTEHY SAVQESMNNI RLNQLMQHEL YGYDQNMCTS DITNSSVPDP GLSNTVSYGF  420
CSDSQDSCGN NMVGNTSFSQ NLSDMSSNYV FNFDESSLFQ TSTLPSLSTI PNSYLLSENS  480
RFL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3751s0039.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	1e-132	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	BT030016	1e-132	BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBank	CP002688	1e-132	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872955.1	1e-151	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-106	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	1e-125	D7MJI6_ARALL; Predicted protein
STRING	Bostr.3751s0039.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-105	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	Bostr.3751s0039.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]