PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0243.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 370aa    MW: 40841.6 Da    PI: 5.8349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0243.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W +eEd++l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  Bostr.30275s0243.1.p 15 KGPWMPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYL 62
                          79********************************************97 PP
2Myb_DNA-binding55.71.2e-1768113148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE+  +v+++++lG++ W++Ia +++ gRt++++k++w++++
  Bostr.30275s0243.1.p  68 RGKFSDEEESTIVRLHALLGNK-WSKIAGHLP-GRTDNEIKNYWNTHM 113
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2711062IPR017930Myb domain
SuperFamilySSF466893.37E-2912109IPR009057Homeodomain-like
SMARTSM007176.9E-111464IPR001005SANT/Myb domain
PfamPF002498.7E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-231669IPR009057Homeodomain-like
CDDcd001674.87E-91762No hitNo description
PROSITE profilePS5129427.16863117IPR017930Myb domain
SMARTSM007177.7E-1667115IPR001005SANT/Myb domain
PfamPF002497.7E-1668112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2770117IPR009057Homeodomain-like
CDDcd001674.42E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRSPCCDQD KGVKKGPWMP EEDDKLTAYI NENGYGNWRS LPKLAGLNRC GKSCRLRWMN  60
YLRPDIRRGK FSDEEESTIV RLHALLGNKW SKIAGHLPGR TDNEIKNYWN THMRKKLSQM  120
GIDPMTHEPR ANDLSPILDV SQMFAAAINN GQFGNNNLFN NNTALEDLLK LQLIHKMLQI  180
ITPKAVPNIN SFNTSSVNPK PEPVVNSFIT NSVNPKPDTT AGQLNSANPQ VFINRSGITP  240
EAATSDFIPS YENVWDGFED NQLPGLVTVS QESLNTAKLG TSTTTEVNDH TGTGMMLGYY  300
GDHLREIPSS GSVSVSPVTS GLNHTGTAQH SSGSDVLEDW EKFLDDETSD SCWKSFLDLT  360
SPTSSPVPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-26151174105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-26151174105C-Myb DNA-Binding Domain
1msf_C7e-26151174105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0243.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759890.0AF175989.1 Arabidopsis thaliana putative transcription factor (MYB39) mRNA, complete cds.
GenBankAK1187280.0AK118728.1 Arabidopsis thaliana At4g17780 mRNA for putative MYB transcription factor, complete cds, clone: RAFL21-07-A19.
GenBankAY5502970.0AY550297.1 Arabidopsis thaliana MYB transcription factor (At4g17785) mRNA, complete cds.
GenBankBT0056420.0BT005642.1 Arabidopsis thaliana clone U51012 putative MYB transcription factor (At4g17785) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567540.20.0myb domain protein 39
SwissprotQ8GWP00.0MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A178USW30.0A0A178USW3_ARATH; MYB39
STRINGBostr.30275s0243.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.10.0myb domain protein 39