PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.29827s0112.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 298aa MW: 34015.2 Da PI: 7.7351

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29827s0112.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.1	2.7e-19	27	75	5	50
SHHHHHHH..HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 5 nksnrqvt..fskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ r+vt +s R ++++KKA ELS+LCd+ev+vi++s +g+l ++++ Bostr.29827s0112.1.p 27 SSAARKVTnsLSMREQTMFKKADELSILCDIEVCVIYYSRDGELiKTWP 75 555566644499******************************9856786 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-13	6	76	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.46E-20	7	102	No hit	No description
Pfam	PF00319	2.1E-13	29	70	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.199	36	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.03E-14	36	111	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDSSMSTKKK TKLSLRNQTC FKKSSLSSAA RKVTNSLSMR EQTMFKKADE LSILCDIEVC 60 VIYYSRDGEL IKTWPEDKSK VRDMAERFCK LNEKERRKKS TNLSQFLNKN ILNDKKTSFD 120 NKDNKFSEKV LEMEDSLENG LRILQDKLRL LQPQNQTESD QSHVVSSGFF TTNLSSSSKD 180 PHQQWTESLM SSVSNTEQDL STSSLSQHQC KFSIFLYNHD NGSFCQLPDS VSSFDQSTST 240 ALLGTQGSCL RSNCNNIDLP VVFPPQMQTQ NPLLHFDQFA PWNHTSSFAD PMMFYYN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29827s0112.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493763	1e-88	AB493763.1 Arabidopsis thaliana At5g27580 gene for hypothetical protein, partial cds, clone: RAAt5g27580.
GenBank	AC007478	1e-88	AC007478.1 Arabidopsis thaliana BAC F15A18 from chromosome V near 68.5 cM, complete sequence.
GenBank	AY141226	1e-88	AY141226.1 Arabidopsis thaliana MADS-box protein AGL89 mRNA, complete cds.
GenBank	BT025291	1e-88	BT025291.1 Arabidopsis thaliana At5g27580 mRNA, complete cds.
GenBank	CP002688	1e-88	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBank	DQ446991	1e-88	DQ446991.1 Arabidopsis thaliana clone pENTR221-At5g27580 MADS-box family protein (At5g27580) mRNA, complete cds.
GenBank	DQ653312	1e-88	DQ653312.1 Arabidopsis thaliana clone 0000012275_0000008899 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006290011.1	1e-156	agamous-like MADS-box protein AGL53
Swissprot	Q7X9H9	1e-130	AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBL	R0H119	1e-155	R0H119_9BRAS; Uncharacterized protein
STRING	Bostr.29827s0112.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5753	9	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26950.1	1e-123	AGAMOUS-like 93

Link Out ? help Back to Top
Phytozome	Bostr.29827s0112.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]