PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29344s0010.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SBP
Protein Properties Length: 918aa    MW: 102733 Da    PI: 5.9236
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29344s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.4e-40121198178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +C+ve+C adls++k+yhrr kvCe+hska+++lv g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Bostr.29344s0010.1.p 121 CCRVENCGADLSKVKDYHRRQKVCEMHSKATSALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANP 198
                           6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-32116183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.505119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-37120201IPR004333Transcription factor, SBP-box
PfamPF031104.5E-30122195IPR004333Transcription factor, SBP-box
SuperFamilySSF484039.17E-7705806IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-5707807IPR020683Ankyrin repeat-containing domain
CDDcd002042.03E-7708806No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MEARNEGEEG HSLFGFSGKR SVEWDLNDWK WDGDLFVARQ LNHGSSNSSS ACSDEANVEI  60
MEKKKRRAVT VIAMEEGNLR DDDDDAPQLT LNLGGGNGGN IEGNGAKKTK LGGGIQNRAI  120
CCRVENCGAD LSKVKDYHRR QKVCEMHSKA TSALVGGIMQ RFCQQCSRFH VLEEFDEGKR  180
SCRRRLAGHN KRRRKANPDT IGNGTPASDD QTSNYLLITL LNMLSNIHSN QSDQTGDQDL  240
LSHLLKSLVS QAGEHVGKNL VGLVQGGGGL QASQALLSLQ QAPREDIKHH SVNVLETPWQ  300
EVYANGSQER AVPDRSEKQV KMNAFDLNDI YIDSDDTTDI ERSSPPPTNP ATSSLDYHQD  360
SRQSSPPQTS RNSDSASDQS PSSPSRDAQS RTDRIVFKLF GKEPNDFPVA LRGQILDWLA  420
HTPTDMESYI RPGCIVLTIY LRQDEASWEE LCCDLSFSLR RLLDLSDDPL WTDGWIYVRV  480
PNQLALAFNG QVVLDTSLPL RSHDCSEIIT VRPLVVTRKA QFTVKGINLH RPGTRLLCAV  540
EGTYLVQEAT QGVMEESDDL KEKNETDFVN FSCEIPIASG RGFMEIEDQG GLSSSFFPFI  600
VSEDEDVCSE IRRLESTLEF TGTDAAMQAM DFIHEIGWLL HRSELNSRLA ESDHSPEDLF  660
PLIRFKFLIE FSMDREWCAV TKKLLNILYE GGTVDLSPDA ALLELCLLHR AVRKNSKPMV  720
EMLLRFIPKK KNQTLSCLFR PDATGPAGLT PLHIAAGKDV SEDVLDALTD DPGMIGIQAW  780
KISRDNTGFT PEDYARLRGH FSYIHLVQRK LNRKPIAVEH VVVNIPESFN IDHKQEKRIL  840
MDSSRLKITQ INQCKLCDHK RVFVTTQHRY VAYRPAMLSM VAIAAVCVCV ALLFKSCPEV  900
LYVFQPFRWE LLGYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-33119176360squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00060PBMTransfer from AT3G60030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29344s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1320960.0AJ132096.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191562.10.0squamosa promoter-binding protein-like 12
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A178VGF00.0A0A178VGF0_ARATH; SPL12
STRINGBostr.29344s0010.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]