PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.26326s0153.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 609aa MW: 66991.9 Da PI: 6.4713 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.9 | 4e-27 | 195 | 248 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl Bostr.26326s0153.1.p 195 KQRVVWTVELHKKFVAAVNQL-GYEKAMPKKILDLMDVEKLTRENVASHLQKFRL 248 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 84.6 | 2.9e-28 | 19 | 127 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl vdD+++ + +l+++l++ +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ Bostr.26326s0153.1.p 19 VLAVDDDQTCLTILESLLRQCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVM 105 799********************.***************888888*******************87754.558**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +eel + Bostr.26326s0153.1.p 106 KGVTHGACDYLLKPVRIEELKN 127 *******************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.2E-182 | 1 | 608 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.99E-35 | 16 | 136 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.5E-43 | 16 | 140 | No hit | No description |
SMART | SM00448 | 2.9E-33 | 17 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.737 | 18 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-25 | 19 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.69E-28 | 20 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 192 | 253 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.286 | 192 | 251 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.84E-19 | 193 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-24 | 195 | 248 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.0E-6 | 197 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 609 aa Download sequence Send to blast |
MTVEQHFEAL DQFPVGMRVL AVDDDQTCLT ILESLLRQCQ YHVTTTNQAQ KALELLRENK 60 NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD PKYVMKGVTH GACDYLLKPV 120 RIEELKNIWQ HVVRSRFDKN RGSNNGEKRD GSGNEGVGNS DQNNGRANNR KRKDQYNEDE 180 DEERDDNDDS SAQKKQRVVW TVELHKKFVA AVNQLGYEKA MPKKILDLMD VEKLTRENVA 240 SHLQKFRLYL KRISGVTNQQ AIMANSDLHF LQMNSSLNGL DGFHHRPIPV GSGQFHGGAP 300 AMRPFPSNGI LGRLNTPSGI GVRNLSSPPA GMFVQNQTDL GKFHHVSSLP LNHSDGGNIL 360 QGLPMPLEFD QLQTNNNNIR NMNNNKIIAG SSMAFPSFST QQNSLIRAPN NNLMVLEGHP 420 QASPPGFSGH QINKRLEHWS KAVSSSTLPP PPAQNSNSIH HQFDVSPLSH SKHDPLEWNN 480 VSSSYSIPFC DSANTLSPPA LDTANTGAFC RNTDFDSNAN AQPGGFYDSL PMRQSGNFGP 540 TTDAMLISNP KEGFVMGQQK LQSGGFVGAD AGSLDDIVNS TMKQEQSQGD LSGGDLGYGG 600 FSSLRTCI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-25 | 191 | 254 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.26326s0153.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417281.1 | 0.0 | PREDICTED: two-component response regulator ARR12 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A178VV07 | 0.0 | A0A178VV07_ARATH; Two-component response regulator | ||||
STRING | Bostr.26326s0153.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.26326s0153.1.p |