PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0234.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 333aa    MW: 37635.3 Da    PI: 8.2414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0234.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH383e-12155201455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Bostr.25542s0234.1.p 155 DHIIAERKRRQKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 201
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-10155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-17155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-11156204No hitNo description
SuperFamilySSF474598.51E-17156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLSTRWFSEQ EIEENSILQQ FHMNSIVGDV HEAQYTLPHS FPTNIDPSYD DLIEMKPSKI  60
LKTTYILPKL PPPPSSPLPP NSKPHLHHQP SSRILSFENA GSNVMDHEYL PTYLNSIFSP  120
EVEAEVPPHR KSEPINPKGT KRAQPFARSQ SNAQDHIIAE RKRRQKLTQR FVALSALVPG  180
LKKMDKASVL GDALKHIKYL QEKVGELEEQ KKERRLESMV LVKKSKLILD DNTQSSSSSS  240
CEDGSSGLDL PEIEVRFSDK DVLIKILCEK QKGRIAKIMA EIENFRFLIT NSSVLPFGPT  300
LDITIVAKKD SDFDMTLMDV VKSLRFALSK FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13155211864Transcription factor MYC2
5gnj_B5e-13155211864Transcription factor MYC2
5gnj_E5e-13155211864Transcription factor MYC2
5gnj_F5e-13155211864Transcription factor MYC2
5gnj_G5e-13155211864Transcription factor MYC2
5gnj_I5e-13155211864Transcription factor MYC2
5gnj_M5e-13155211864Transcription factor MYC2
5gnj_N5e-13155211864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0234.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282858.10.0transcription factor bHLH25 isoform X1
SwissprotQ9T0720.0BH025_ARATH; Transcription factor bHLH25
TrEMBLR0F3250.0R0F325_9BRAS; Uncharacterized protein
STRINGBostr.25542s0234.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-167bHLH family protein