PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0666.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19634.3 Da PI: 9.4768 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.6 | 1.8e-19 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Bostr.23794s0666.1.p 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9996665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.59E-26 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-23 | 12 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-19 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 NLDSVAERFL REYDDSDSGD EEGRGHNRPK LKKMSERLDL LNQEIEAEKK RGEKCQEKLE 120 SAGDERFKKS IGTLTLDELN EYKDQLQTVH GRVQGQANHM QASSCLMFLS RK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 9e-16 | 1 | 75 | 1 | 74 | MEF2C |
5f28_B | 9e-16 | 1 | 75 | 1 | 74 | MEF2C |
5f28_C | 9e-16 | 1 | 75 | 1 | 74 | MEF2C |
5f28_D | 9e-16 | 1 | 75 | 1 | 74 | MEF2C |
6byy_A | 9e-16 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 9e-16 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 9e-16 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 9e-16 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0666.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004077 | 0.0 | AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence. | |||
GenBank | AC004481 | 0.0 | AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180991.1 | 1e-112 | AGAMOUS-like 29 | ||||
Swissprot | O64703 | 1e-113 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A178VU29 | 1e-110 | A0A178VU29_ARATH; AGL29 | ||||
STRING | Bostr.23794s0666.1.p | 1e-124 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-107 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0666.1.p |
Publications ? help Back to Top | |||
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