PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0621.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 290aa MW: 33195.6 Da PI: 4.9365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0621.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.2	2.6e-07	167	211	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq Bostr.23794s0621.1.p 167 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 211 567899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.697	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-10	165	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	165	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-9	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-5	167	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.76E-4	183	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDCLSYFFNY DPPVQLQDCF LPDMNMIIPE SDSFFFQSQP QLEFHQPLFQ EEAPSQIHFD 60 PLCGQFLSTQ EIFLPNPKTE IFNETHDLDS FVPTPKRQKL VNSSYHCNNY NHFQSHNPSF 120 FDPLGDLDFV QEASTFPEFR VPDFSLAFKV GRGAQDDTKI PTLSSQSIAA RERRRRIAEK 180 THELGKLIPG GQKLNTAEMF QAAAKYVKFL QSQVGILQLM QTTKKGSSNV QMETRVLLES 240 QAIQEKLSTE EVCLVPCEMV QDLTTEETIW RNPKISREIN KLLSKDLAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0621.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY234412	0.0	AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002879517.1	0.0	transcription factor bHLH53
Swissprot	Q84RD0	1e-179	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	0.0	D7LH48_ARALL; Predicted protein
STRING	Bostr.23794s0621.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-179	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.23794s0621.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]