PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.21132s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | TCP | ||||||||
Protein Properties | Length: 120aa MW: 12829.3 Da PI: 7.5226 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.6 | 1.9e-29 | 14 | 91 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec 73 a +++++++h kvggRdRR+Rl+a++a ++F L++eLGf +d++t+ WLl++a+pai ++tg++ +++ +c Bostr.21132s0005.1.p 14 ARTTTSSKDRHVKVGGRDRRIRLPASVAPQLFNLTKELGFQTDGETVGWLLRNAEPAIFAATGLGVNHSifsdnsIRC 91 5567899*********************************************************77777332221223 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.6E-25 | 18 | 84 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.183 | 20 | 74 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MDSRKEMNNI QKAARTTTSS KDRHVKVGGR DRRIRLPASV APQLFNLTKE LGFQTDGETV 60 GWLLRNAEPA IFAATGLGVN HSIFSDNSIR CLETELEAAG YETATDASSA ATTTATTTV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early processes in pollen development. {ECO:0000269|PubMed:16786299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.21132s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495849.1 | 2e-41 | PREDICTED: transcription factor TCP16-like | ||||
Swissprot | Q9M1U4 | 1e-37 | TCP16_ARATH; Transcription factor TCP16 | ||||
TrEMBL | D7LNL8 | 4e-37 | D7LNL8_ARALL; Uncharacterized protein | ||||
TrEMBL | R0HIU4 | 3e-37 | R0HIU4_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.21132s0005.1.p | 6e-83 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15750 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 4e-39 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.21132s0005.1.p |
Publications ? help Back to Top | |||
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