PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.19427s0042.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 329aa    MW: 36996.1 Da    PI: 7.5301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.19427s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13150196455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h  +Er+RR+++ ++f  L  l+P +     kK++K+++L  A++YIk+Lq
  Bostr.19427s0042.1.p 150 DHIHAERKRREKLTQRFVALSALVPGL-----KKMDKISVLGDAIKYIKYLQ 196
                           6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-18150214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.95E-13151200No hitNo description
SuperFamilySSF474591.83E-17151216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATTKNVFST RCSSELDIED YSIIHQYHMN SLFGDVPQSL SSLDDTTTCY NFDASCNDDL  60
FEEILKTTQI SPTIHPFSSS NTPPYTHQPS SRILSFEKTG LKVMNHNSSN LIFIPKEEEI  120
GLPDQRKANL IIRGTKRAQT LTRSQSNAQD HIHAERKRRE KLTQRFVALS ALVPGLKKMD  180
KISVLGDAIK YIKYLQESVK EYEEQKQERT MESMVLVQKS QLVLDENHQS SSSSSDGNRG  240
CSSSNLPEIE VRVSGKYILI KILCEKQKGN VIKIMGEIEK LGLSITNSNF LPFGPTFDIS  300
IITQKNSNFD MKIEDVVKNL SCGLSKLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-13150206864Transcription factor MYC2
5gnj_B9e-13150206864Transcription factor MYC2
5gnj_E9e-13150206864Transcription factor MYC2
5gnj_F9e-13150206864Transcription factor MYC2
5gnj_G9e-13150206864Transcription factor MYC2
5gnj_I9e-13150206864Transcription factor MYC2
5gnj_M9e-13150206864Transcription factor MYC2
5gnj_N9e-13150206864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159ERKRRE
2155160RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00273DAPTransfer from AT2G22750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.19427s0042.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4465490.0DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBankDQ6530150.0DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472271.10.0PREDICTED: transcription factor bHLH18
SwissprotQ1PF171e-158BH018_ARATH; Transcription factor bHLH18
TrEMBLA0A3P6CFN30.0A0A3P6CFN3_BRACM; Uncharacterized protein
STRINGBostr.19427s0042.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.21e-160bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]