PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.19424s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | WRKY | ||||||||
Protein Properties | Length: 473aa MW: 52539.6 Da PI: 8.7546 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3.1e-30 | 114 | 172 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers ++vv+++Y geH+h+k Bostr.19424s0024.1.p 114 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSP-GGQVVDTVYFGEHDHPK 172 58****************************************.***************85 PP | |||||||
2 | WRKY | 105.2 | 3.4e-33 | 286 | 344 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers+ d+k++++tYeg+H+h+ Bostr.19424s0024.1.p 286 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSLDTKLLITTYEGKHDHD 344 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.355 | 109 | 173 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-24 | 110 | 173 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.5E-26 | 111 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-34 | 114 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-24 | 115 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-33 | 273 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-28 | 280 | 346 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.509 | 281 | 346 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-38 | 286 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MAEVGKVPAS DMELADSSET KAADDVVATD KMEAKPVTVT RTETVVEGCQ TKSLKSADCK 60 ELLQPVPHTT ASQSEVDVAS PTSEKAPKIS ESSTVLSLQS GSEGNSPFIR EKVMEDGYNW 120 RKYGQKLVKG NEFVRSYYRC THPNCKAKKQ LERSPGGQVV DTVYFGEHDH PKPLTGVIPI 180 NQDKRTDVLA AVSKEKSSGS IVQTHRQTEP PKIHGGLHFS VIQPANDVKT DISQSSRIKG 240 DSTHKDYNSP SSKRRKKGGN IELNPVERST NDSRNVVHTQ TLFDIVNDGY RWRKYGQKSV 300 KGSPYPRSYY RCSSSGCPVK KHVERSSLDT KLLITTYEGK HDHDMPPGRV VTHNNMLDPE 360 VDDKELNFKE RDANKTPQSS ALQSITKDQH VEDHPRKKTK TNGFEKSLDQ GPVLDEKLKE 420 KIKDRSDVNK DHAANQAKLE TKSDDKTTAC QEKAVKTLES EEQKPKTEPA QS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-46 | 113 | 348 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.19424s0024.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF442390 | 0.0 | AF442390.1 Arabidopsis thaliana WRKY transcription factor 1 splice variant 2 (WRKY1) mRNA, complete cds; alternatively spliced. | |||
GenBank | BT029167 | 0.0 | BT029167.1 Arabidopsis thaliana At2g04880 mRNA, complete cds. | |||
GenBank | X92976 | 0.0 | X92976.1 A.thaliana mRNA for ZAP1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488735.1 | 0.0 | PREDICTED: WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 0.0 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | C0SV43 | 0.0 | C0SV43_ARATH; Uncharacterized protein At2g04880 (Fragment) | ||||
STRING | Bostr.19424s0024.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 0.0 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.19424s0024.1.p |
Publications ? help Back to Top | |||
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