PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.13404s0054.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 318aa    MW: 36129.4 Da    PI: 5.2185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.13404s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99.1e-14128179155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i+  A+++Ik+L+
  Bostr.13404s0054.1.p 128 QRMTHIAVERNRRKMMNEYLSVLRSLMPDS---YVQRCDQASIVGGAINFIKQLE 179
                           79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15127188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.61E-12127183No hitNo description
Gene3DG3DSA:4.10.280.104.1E-13127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALEGVFLQH DNIYSYNGIE PYSNIYTEDE PHFYDLQDSL SFLDSQIQNY DSTFIQEDYY  60
ENTTTFLHQP LPEIAISEAN ITPNGNSIGS PNCDMSYHRD SEINTSGNKK ATRRRTRGKK  120
NKEEINNQRM THIAVERNRR KMMNEYLSVL RSLMPDSYVQ RCDQASIVGG AINFIKQLEH  180
RLHHLNVNGE QNENSLSADD ISSATPFSDA FKLPQYSMGS SSVSENVVLE NALAEIEVSL  240
VESHASLKIR SRRRPKLLFN LVSGLQSLGF IILHLNVSTV SDFILYCFST KMEDYCKLTA  300
EADIATAVYE MLRTQYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128139RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.13404s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894606.10.0transcription factor bHLH94
SwissprotQ9C7T41e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ40.0D7KPZ4_ARALL; Uncharacterized protein
STRINGBostr.13404s0054.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]