PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0226.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 250aa MW: 28542.5 Da PI: 8.215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0226.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	76	130	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +++ hn++Er RR r+ ++ +L +llP +++ ++kK s +i ++ YI +L Bostr.10273s0226.1.p 76 KKQDHNANERLRRMRLHASYLTLGTLLPDhSPSSSKKKWSAPSIIDNVITYIPKL 130 6899***********************666777888************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-11	71	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-10	75	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.214	75	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-7	76	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-5	81	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
THVHRYIHQT RETYIRKTVT FFCDNLCILT KKNNNGEDES ETIIEKESAE KDTCQSQRKR 60 KEPILHEVDG SSGAAKKQDH NANERLRRMR LHASYLTLGT LLPDHSPSSS KKKWSAPSII 120 DNVITYIPKL RNEVGELTLR KQKLVELERR GPSIRAISVL ELGESGYEAV VQICLKKENE 180 DEFSNLLHVM EVQGLSILSA STSQVCREQR VVCYNFHVKM DEKPCEGDDY ITLLKNNIIS 240 SLRDNTKCK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0226.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016162	1e-154	AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBank	AC016972	1e-154	AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBank	CP002684	1e-154	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177276.4	1e-139	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	F4I8F9	1e-140	BH160_ARATH; Transcription factor bHLH160
TrEMBL	R0IB59	1e-137	R0IB59_9BRAS; Uncharacterized protein
STRING	Bostr.10273s0226.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-138	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.10273s0226.1.p

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]