PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10058s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 93aa    MW: 10460.8 Da    PI: 5.1368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10058s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-0724592054
                          HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54
                            +Lr++lP+   + +s K+s + +L+++++YI++L
  Bostr.10058s0009.1.p 24 VTKLRQILPEiGQQSRSDKVSASKVLQETCNYIRNL 59
                          579*******999*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.29459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-52359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SAPRISDDQM IDLVTKLRQI LPEIGQQSRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSERL SQLLESVDED SPEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10058s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882461e-116AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444202.12e-54PREDICTED: transcription factor PRE1 isoform X1
SwissprotQ9LJX13e-50PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GTI34e-53A0A087GTI3_ARAAL; Uncharacterized protein
STRINGBostr.10058s0009.1.p7e-58(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-52bHLH family protein