PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0255.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 335aa MW: 38488.4 Da PI: 9.3737

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0255.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.2	1.2e-24	3	52	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + +++s +++++++R+++i+KKA+ELSvLC++ev+vi++++ g+l+++++ Bostr.0568s0255.1.p 3 QASSSSCKSTSLTNRLKTIFKKAYELSVLCAIEVCVIYYGPGGELKTWPK 52 5689999*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.601	1	54	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.4E-4	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-16	3	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-14	8	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MKQASSSSCK STSLTNRLKT IFKKAYELSV LCAIEVCVIY YGPGGELKTW PKEREKVKNM 60 AVRYKEARKR KKSLNLHEFL EKEKDKDKDK GKTNMKKKNV KYPDWYPNFD HYSPQQLSQL 120 IQSLERTLST LQERLRFVEA QKQRNTNLIH QTQPLNPSNF SLYMYNHEDA TLSQLPLTAS 180 HSNQLTNYQN HLMKQEFYGF GQNMCMDNIT NANFQHPCYS NTQGYAPLLS VQASSMNNYG 240 LKNHLMQQQE LNSFDQNMGM MSNITKSNGL SNTVPHEFYS DFQKNPYGDM VGNTSFSQNM 300 FSSYDASSLL QTSALPSLHT IPNSYCLSDN SRLI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	71	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0255.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011479	4e-98	AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBank	AY141224	4e-98	AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBank	CP002688	4e-98	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_201336.1	1e-165	AGAMOUS-like 78
Swissprot	Q9FLL0	4e-72	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A178UIW0	1e-164	A0A178UIW0_ARATH; AGL78
STRING	Bostr.0568s0255.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	1e-154	AGAMOUS-like 78

Link Out ? help Back to Top
Phytozome	Bostr.0568s0255.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]