PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.0568s0124.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19198.5 Da PI: 8.9373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.9e-19 | 107 | 158 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++ykGVr+++ +g+W+AeI+ p + +r +lg+f tae+Aa+a+++a+ +l ge Bostr.0568s0124.1.p 107 KKYKGVRQKP-SGKWAAEIWNP-----SmkARRWLGTFPTAEMAARAYDEAAAELVGE 158 59******99.7*********8.....335************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.37E-19 | 107 | 143 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.0E-24 | 108 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-27 | 108 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-17 | 108 | 159 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.323 | 108 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 108 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-8 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MNPSKFDPSN TDNSENVLSN DQNENVPAVA SPPPPSSSYL TRDQEHEIMV SALRQVISNS 60 GGHTSSSNLI AAETLPPPDA GPCPLCGITG CYGCVFPRPH GEMKKEKKYK GVRQKPSGKW 120 AAEIWNPSMK ARRWLGTFPT AEMAARAYDE AAAELVGETS VRRGTTSGER IKRRQR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00594 | DAP | Transfer from AT5G67000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.0568s0124.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006281738.1 | 7e-96 | ethylene-responsive transcription factor ERF122 | ||||
Swissprot | Q38Q40 | 1e-82 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | R0F066 | 2e-94 | R0F066_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.0568s0124.1.p | 1e-129 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67000.1 | 5e-70 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.0568s0124.1.p |