PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA035894-PA
Common NameOsI_38991
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 373aa    MW: 39358.5 Da    PI: 6.5758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA035894-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.63.8e-072152501555
                       HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +i ++f +L++l+P +      K + a++L ++++Y+ksLq
  BGIOSGA035894-PA 215 QITERFRTLQRLVPGC-----DKSNQASTLDQTIQYMKSLQ 250
                       699************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.074200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10205257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5206250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-10206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-4207255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-6215254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAFMNRQDPE ASGFFSDDDS GETAAIAAAA AMENEDFSYM LREFDYYTSS EDLFELMWQG  60
GGGGGASSFD QPPPPVSYHR LSPPPPAMGT TTTTLLPEQP LVDDHHLPAA AAAPPSEEEM  120
AAWLYPIVSG HEVAGGGWRS PEAQDDRRAA PAPEKKQMEK MPAAASPTTT MNKDETSDDS  180
GERKKKKASS AAGKASKHHH AAAGAHNLTE KAEVQITERF RTLQRLVPGC DKSNQASTLD  240
QTIQYMKSLQ HQLKAMSVVG SPPALLYPAA VHPQSYMHPP PPPPPVTMPM HPGMVLAAPP  300
PGAAPPPGPP AMVPFGAMLP YPPYPAVLLP PPAAATLYGR PPAPAPGVAA RRHGSSGGGR  360
ISKSSSSSLC KKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.698000.0callus| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7325350.0AL732535.4 Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619315.16e-89transcription factor APG
TrEMBLA2ZME10.0A2ZME1_ORYSI; Uncharacterized protein
STRINGOPUNC12G16280.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.12e-11bHLH family protein