PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA028878-PA
Common NameOsI_29664
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 862aa    MW: 92834.3 Da    PI: 7.0133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA028878-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063344366123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k+F  +s +  H  +H
  BGIOSGA028878-PA 344 FECPVCNKTFEEQSRYFGHVGSH 366
                       89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.023169242IPR001739Methyl-CpG DNA binding
SuperFamilySSF541716.54E-7173224IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.104.5E-4174223IPR001739Methyl-CpG DNA binding
PfamPF014292.0E-5179222IPR001739Methyl-CpG DNA binding
SuperFamilySSF576679.63E-5294366No hitNo description
SMARTSM003550.41295318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297318IPR007087Zinc finger, C2H2
SMARTSM003550.023344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328344371IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
METEVFPVVD LRVLSQSDLE ALAAASAHAV APGGSCPDAD QLPPLKIDRA VFNESAGSRK  60
QTFSRLPRGN DKEDSFIAYH LRRLFAPDDP SSPQIQTLAL PAPPSPDPDQ LTTNSKGVSV  120
DLVSLSRLAD PYDAELGKRT AGMTTEEELM GFISSLAGQW VSQRMRRKLV DASFFGDHLP  180
SGWRLQLGIK RKDRKAWVNC FSYVSPKGQS FATCQEVSAY LMSLLGYPEF KTDNIEYGST  240
QQHGLCADDG VNVLGVQHQI GTGMDSQSIL PVASITFSSH SRDQDETDAD DINSYECQQC  300
NLTFHGQSAY AHHLITFHKM GSKRRKINKV GKFGEPVIGK DGKFECPVCN KTFEEQSRYF  360
GHVGSHAKYH GLTPEAFLQT LSGKVGNDSF AGLSCSLQDL VGSPQLNEKT TASEARSQHH  420
NCSTKHGGNS TRGIDLFNSN CPANFNGHNQ TWCRPDEIPP TTDAPSTWTY RNNVTNCADR  480
TVPRTAPQPN DHMDCRVSGF AEATNFNDQA GRHQGFRPSS FGTTNHCQGQ IIDHAVAASK  540
HAEVNNSMKS RDVNLNSRLN TISFPIATAN NETSTALNDV NRSCITGKGF SGSFSNNDGA  600
ASIVLPSSGL NNKIPSSLGV ADRSSIAARS FNAGYVNENG ASEANNIGNK NNTMVYQTSL  660
AMRPVSPCDL QLGFSGQKQQ ILPGYGELRP AASGSPQLGG MAANSSIPTR PSQPQFGSMA  720
RTDALPTGPS QPGSLARPNF VPTGFSQFAS RPPTSVPPAD SSQFAGGMAR QNIPTTSEPT  780
LVLGYTPQMV NGPPAQLGWD LSLSRMVSEG MLPVLCIWCN SQFHHFGPID AQQSGSFGFI  840
CPACKEKMSG NPNAPNNGPW QP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.757090.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329791210.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLB8BBU60.0B8BBU6_ORYSI; Uncharacterized protein
STRINGOS08T0485700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419