PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA027698-PA | ||||||||
Common Name | GL2-7, OsI_026745, ROC7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 785aa MW: 84215.8 Da PI: 6.4506 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.3e-21 | 125 | 180 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k BGIOSGA027698-PA 125 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 180 688999***********************************************999 PP | |||||||
2 | START | 200.9 | 5.4e-63 | 301 | 527 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++elv++a+++ep+W e + ++e+ ++f+++ + ++ea+r+++vv+m+++ lve l+d++ qW+ + +a+tl BGIOSGA027698-PA 301 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATL 392 57899********************99999*********998889*******************************.99999999999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE.SSEEEEEEEECTCEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael.lpSgiliepksnghskv 164 ev+s+g galqlm+ae+q++splvp R+ f+Ry++q+++g+w++vdvS+d + ++ +R+++ +pSg+li++++ng+skv BGIOSGA027698-PA 393 EVLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGggcQPAAARGHRrRPSGCLIQEMPNGYSKV 485 *************************************************************9999********8537**************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 twvehv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+ BGIOSGA027698-PA 486 TWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 527 ****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 111 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-20 | 112 | 182 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 122 | 182 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-20 | 123 | 186 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.44E-20 | 124 | 183 | No hit | No description |
Pfam | PF00046 | 2.4E-18 | 125 | 180 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 157 | 180 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.25 | 292 | 530 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.5E-34 | 293 | 529 | No hit | No description |
CDD | cd08875 | 4.84E-120 | 296 | 526 | No hit | No description |
SMART | SM00234 | 7.2E-60 | 301 | 527 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-52 | 302 | 527 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.8E-5 | 367 | 526 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.78E-26 | 547 | 770 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MMIPGRNMSP AMIGRPNGGG GGGGVAYASS SSALSLGQSL LDGHHHQLPS LLQQHHNGHH 60 LLDQHQQHQH QLPPQATTTS ESDGRAPRDE LEMSKSGGSD NLESGGGGGG GGSGDDQDPN 120 QRPRKKRYHR HTQHQIQELE AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK 180 TQHERHENNA LRAENEKLRA ENMRYKEALA NASCPNCGGP AAIGEMSFDE HHLRLENARL 240 RDEIDRISAI AAKYVGKPAA AVSAAYPPLP PSNRSPLDHM GIPGAGADVF GADFDKPLVI 300 ELAVAAMEEL VRMAQLGEPL WAPALGGEAL GEEEYARTFP RGLGPKSPEL RSEASRETAV 360 VIMNHVSLVE MLMDVGQWTA LFSSIVSRAA TLEVLSTGVA GNHNGALQLM SAEFQMPSPL 420 VPTRETQFLR YCKQHPDGTW AVVDVSLDGL RAGAGGGCQP AAARGHRRRP SGCLIQEMPN 480 GYSKVTWVEH VEADDQMVHN LYKPVVNSGM AFGARRWVAT LERQCERLAS AMASNVASSG 540 DAGVITTSEG RRSMLKLAER MVASFCGGVT ASTTHQWTTL SGSGAEDVRV MTRKSVDDPG 600 RPPGIVLNAA TSFWLPVPPS RVFDFLRDDS TRSEWDILSN GGVVQEMAHI ANGRDHGNAV 660 SLLRVNNANS NQSNMLILQE CCTDATGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA 720 ILPDGPDGGG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIACTVERIK AAITGDNGVA 780 PPCPR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20576 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 211970934 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318563 | 0.0 | AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648539.1 | 0.0 | homeobox-leucine zipper protein ROC7 | ||||
Swissprot | A2YR02 | 0.0 | ROC7_ORYSI; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | A0A0E0QE32 | 0.0 | A0A0E0QE32_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G02510.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |