PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA026705-PA | ||||||||
Common Name | OsI_29824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | SBP | ||||||||
Protein Properties | Length: 400aa MW: 40260.2 Da PI: 9.8435 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 47.5 | 4.8e-15 | 131 | 162 | 47 | 78 |
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 ++fh l efD++krsCrrrLa+hnerrr++q+ BGIOSGA026705-PA 131 GKFHLLPEFDQGKRSCRRRLAGHNERRRRPQT 162 79***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.622 | 131 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.3E-12 | 131 | 163 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.2E-8 | 131 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 6.1E-4 | 131 | 147 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEMASGGGAA AAAGGGVGGS GGGGGGGDEH RQLHGLKFGK KIYFEDAAAA AGGGGTGSGS 60 GSASAAPPSS SSKAAGGGRG GGGKNKGKGV AAAAPPPPPP PPRVPGGGVR RGSERDQELL 120 LPPQGALKDE GKFHLLPEFD QGKRSCRRRL AGHNERRRRP QTPLASRYGR LAASVGEEHR 180 RFRSFTLDFS YPRVPSSVRN AWPAIQPGDR ISGGIQWHRN VAPHGHSSAV AGYGANTYSG 240 QGSSSSGPPV FAGPNLPPGG CLAGVGAATD SSCALSLLST QPWDTTTHSA AASHNQAAAM 300 STTTSFDGNP VAPSAMAGSY MAPSPWTGSR GHEGGGRSVA HQLPHEVSLD EVHPGPSHHA 360 HFSGELELAL QGNGPAPAPR IDPGSGSTFD QTSNTMDWSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 82 | GGRGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6636 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992400 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107191 | 0.0 | AK107191.1 Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650813.1 | 1e-180 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 1e-178 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A2YWW1 | 0.0 | A2YWW1_ORYSI; Uncharacterized protein | ||||
STRING | OBART08G20010.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-14 | squamosa promoter binding protein-like 9 |