PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA024543-PA
Common NameOsI_25489
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 374aa    MW: 40497.8 Da    PI: 4.0961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA024543-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.41.3e-2391481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...d 89 
                       lppG+rF+P+++elv +yL ++++g++l+l+ v+ ++d ++++Pw+L + +  + +e +f  +++ k+ +gkr++r +   g+W+ +      
  BGIOSGA024543-PA   9 LPPGLRFDPSNDELVGRYLLRRLQGQPLPLDGVVLDADPLSAQPWRLLADHGRGGDEAFFLEEAHAKNDKGKRQKRtVEGGGFWQGQRMcvdG 101
                       79****************************999**************8777778899*******************555599**976553323 PP

               NAM  90 kevlsk..kgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                       k++l+   +  +           + k +L f+ ++ ++g ++ Wvmhey++
  BGIOSGA024543-PA 102 KKLLVPgdD--DgggggevleiAWRKYVLSFF-AEGERG-SSGWVMHEYSV 148
                       444444550..24555666787899999****.444454.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-303167IPR003441NAC domain
PROSITE profilePS5100527.5729167IPR003441NAC domain
PfamPF023655.0E-1510148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAAAGADGLP PGLRFDPSND ELVGRYLLRR LQGQPLPLDG VVLDADPLSA QPWRLLADHG  60
RGGDEAFFLE EAHAKNDKGK RQKRTVEGGG FWQGQRMCVD GKKLLVPGDD DGGGGGEVLE  120
IAWRKYVLSF FAEGERGSSG WVMHEYSVTA PADLASSPLR LYRIRFSGYG KKRKREPEDD  180
GRAHGAPRRA EAETALFDLE VGPPPPPLLV PPPAAAAADH GTDQSSSGVT DMVFRDLPDL  240
IADAGAALPD QNQQDWSEVA DQSSFCVMGD DSSLLLPDLP GMIDDNEHQQ FVRECDMPHL  300
FVPQAEEAIA GGGAASAPSA DNQNCEFNDG EDMALSDFEF PESIDEVLSY IDFSTSDTSC  360
RDFTMDELFD LPVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037540.0AP003754.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1341_A08.
GenBankAP0043820.0AP004382.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0418E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.10.0NAC transcription factor 32
TrEMBLA2YJT80.0A2YJT8_ORYSI; Uncharacterized protein
STRINGONIVA07G07330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137