PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023988-PA
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 279aa    MW: 30483.2 Da    PI: 6.0914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023988-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-102032431055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  BGIOSGA023988-PA 203 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 243
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12198255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-12202247No hitNo description
PfamPF000107.8E-8203243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAQFLGAHGD HCFTYEQMDE SMEAMAAMFL PGLDTDSNSS SGCLNYDVPP QCWPQHGHSS  60
SVTSFPDPAH SYGSFEFPVM DPFPIADLDA HCAIPYLTED LISPPHGNHP SARVEEATKV  120
VTPVATKRKS SAAMTASKKS KKAGKKDPIG SDEGGNTYID TQSSSSCTSE EGNLEGNAKP  180
SSKKMGTRAN RGAATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK  240
FLQLQIKLLS SDDMWMYAPI AYNGVNISNI DLNISSLQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.10.0transcription factor bHLH54
TrEMBLA0A0E0QAK20.0A0A0E0QAK2_ORYRU; Uncharacterized protein
STRINGORUFI07G21430.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.15e-39root hair defective 6-like 4