PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA022298-PA

Common Name

OsI_21640

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 1184aa MW: 129910 Da PI: 8.229

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA022298-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.1	4.8e-30	835	894	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ BGIOSGA022298-PA 835 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 894 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52540	3.74E-59	7	263	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.7E-10	11	148	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	2.8E-60	14	291	IPR002182	NB-ARC
PRINTS	PR00364	2.9E-16	20	35	No hit	No description
PRINTS	PR00364	2.9E-16	103	117	No hit	No description
PRINTS	PR00364	2.9E-16	199	213	No hit	No description
SuperFamily	SSF52058	2.89E-11	316	478	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	5.2E-7	351	403	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	5.2E-7	437	475	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	2.9E-16	443	459	No hit	No description
Gene3D	G3DSA:2.20.25.80	2.0E-31	820	894	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-27	828	895	IPR003657	WRKY domain
PROSITE profile	PS50811	28.311	830	896	IPR003657	WRKY domain
SMART	SM00774	3.4E-37	835	895	IPR003657	WRKY domain
Pfam	PF03106	6.6E-27	836	894	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043531	Molecular Function	ADP binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1184 aa Download sequence Send to blast
MTLKIALKMI SGSEDVEVQT IWIVGAGGLG KTTLAKKVYE SSNITSMFPC RAWITVSQSF 60 DVMDLLKDMI KQLLGKESLD NLFTKYKEVK IKENNLTDHL KGWLRNKRYF LVLDDLWSTK 120 AWDCLKPTLW GNNREGSRLV VTTRNRDLAE GSSSPLVYPL QTLHREDATK LLLAKTNKSL 180 CDINKDGMNE TFEKILKKCG GLPLAIITIG GLLAAKDVKE WDGLYAQIPS ELENNPSFEV 240 MRQVLALSYK YLPSHLKPCF LYLSIFPEDF EIQRKRLVYR WIAEGFIRAR DGFNATIKSE 300 YGRKYQELSS PRYHTRYHMI SISREEKFVC RIDDKETCLM EENIRHVAFY NSNSSEIAMD 360 LNQVRSLTVF GERPKELTPL LCSPQVRMLR VLDFQGVRFG MTQKEMDHIW SVLHLKYMNI 420 RCDYNLPNSS GYSKIYRIPR SIGKLQDLRV LDISNTCITS LPTEICELRS LNILRCARKE 480 YYEFFDPSKP IQCLFALSCI PVTMALADSD QRHEITAELH MACSTRWFST CGVRCLPVAA 540 IGKFSLVGRS SYGADDEGME MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG 600 DKISDGNFFK SLQNISSTKE EVCSPGPIER SCMDSSLLNM KAQNKGQDDK LESTRAEMGE 660 VREENERLKT LLSRISHDYR SLQTHFYDVL QQGRAKKLPD SPATDIEEPE FVSLRLGTST 720 SKCKKEDKST TSSEVKGSTE DFLKIKGGLS LGLSDCRVDA NNSEKVQPDV MTLSPEGSFE 780 DARDDTAETT EQWPPSKMLK NLRSVGAEAE DDIAPQPQVK KARVSVRARC DAPTMNDGCQ 840 WRKYGQKIAK GNPCPRAYYR CTVAAGCPVR KQVQRCADDM SILITTYEGT HNHPLSVSAT 900 AMASTTSAAA SMLISGSSST SLAAYPAAAA SPALAFDASS KPPLIGGRPF FLPTAAAAAI 960 TSTPSYPTIT LDLTSPAAAA TSSHAAFSLS NRFSHTRYPS TGFTFSGSGP SSAPWPGYLS 1020 YGASLSAHPY NAGGGKSSSS FEAALSSING SRQQGGGGGG GSAPPLYQMQ QKAAAAAPPP 1080 PSVITDTIAK AITADPSFHT ALAAAITSYV GKKGSPPASG GEDSKVGLKW GEHLGLGLTH 1140 SSLSTAAAAA ASSSSQMFLQ PSLGLSGSTT SASTSPVANR EQAH

Sequence ? help Back to Top

Protein Sequence Length: 1184 aa Download sequence Send to blast

MTLKIALKMI SGSEDVEVQT IWIVGAGGLG KTTLAKKVYE SSNITSMFPC RAWITVSQSF  60
DVMDLLKDMI KQLLGKESLD NLFTKYKEVK IKENNLTDHL KGWLRNKRYF LVLDDLWSTK  120
AWDCLKPTLW GNNREGSRLV VTTRNRDLAE GSSSPLVYPL QTLHREDATK LLLAKTNKSL  180
CDINKDGMNE TFEKILKKCG GLPLAIITIG GLLAAKDVKE WDGLYAQIPS ELENNPSFEV  240
MRQVLALSYK YLPSHLKPCF LYLSIFPEDF EIQRKRLVYR WIAEGFIRAR DGFNATIKSE  300
YGRKYQELSS PRYHTRYHMI SISREEKFVC RIDDKETCLM EENIRHVAFY NSNSSEIAMD  360
LNQVRSLTVF GERPKELTPL LCSPQVRMLR VLDFQGVRFG MTQKEMDHIW SVLHLKYMNI  420
RCDYNLPNSS GYSKIYRIPR SIGKLQDLRV LDISNTCITS LPTEICELRS LNILRCARKE  480
YYEFFDPSKP IQCLFALSCI PVTMALADSD QRHEITAELH MACSTRWFST CGVRCLPVAA  540
IGKFSLVGRS SYGADDEGME MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG  600
DKISDGNFFK SLQNISSTKE EVCSPGPIER SCMDSSLLNM KAQNKGQDDK LESTRAEMGE  660
VREENERLKT LLSRISHDYR SLQTHFYDVL QQGRAKKLPD SPATDIEEPE FVSLRLGTST  720
SKCKKEDKST TSSEVKGSTE DFLKIKGGLS LGLSDCRVDA NNSEKVQPDV MTLSPEGSFE  780
DARDDTAETT EQWPPSKMLK NLRSVGAEAE DDIAPQPQVK KARVSVRARC DAPTMNDGCQ  840
WRKYGQKIAK GNPCPRAYYR CTVAAGCPVR KQVQRCADDM SILITTYEGT HNHPLSVSAT  900
AMASTTSAAA SMLISGSSST SLAAYPAAAA SPALAFDASS KPPLIGGRPF FLPTAAAAAI  960
TSTPSYPTIT LDLTSPAAAA TSSHAAFSLS NRFSHTRYPS TGFTFSGSGP SSAPWPGYLS  1020
YGASLSAHPY NAGGGKSSSS FEAALSSING SRQQGGGGGG GSAPPLYQMQ QKAAAAAPPP  1080
PSVITDTIAK AITADPSFHT ALAAAITSYV GKKGSPPASG GEDSKVGLKW GEHLGLGLTH  1140
SSLSTAAAAA ASSSSQMFLQ PSLGLSGSTT SASTSPVANR EQAH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j5t_C	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5t_F	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5t_G	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5t_L	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5t_O	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5u_A	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5v_A	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j5w_A	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j6i_C	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j6i_F	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j6i_G	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j6i_L	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6j6i_O	7e-36	13	454	177	618	Disease resistance RPP13-like protein 4
6s2p_N	2e-36	8	300	23	304	NRC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.50271	0.0	panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37990075	0.0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003767	0.0	AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643468.1	0.0	probable WRKY transcription factor 72 isoform X1
TrEMBL	B8B2N5	0.0	B8B2N5_ORYSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-62	WRKY DNA-binding protein 72