PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA022010-PA | ||||||||
Common Name | OsI_21488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 274aa MW: 30571.8 Da PI: 10.4237 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 71.7 | 3e-22 | 1 | 99 | 1 | 86 |
GAGA_bind 1 mdddgsre..rnkg.yye..........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 md+ g+re r+++ +y+ +++lk++++++l++++++rd++irer++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+ BGIOSGA022010-PA 1 MDNLGHREngRQRPdQYKglhtqwmmpqTQRHLKDHQSMNLLALMNDRDNAIRERDHALAEKKAAIAERDMAFTQRDAAMAERNAAVVERDNALA 95 9999999999****9***********74449***************************************************************9 PP GAGA_bind 83 alll 86 al+ BGIOSGA022010-PA 96 ALES 99 9875 PP | |||||||
2 | GAGA_bind | 279 | 2.3e-85 | 103 | 274 | 138 | 301 |
GAGA_bind 138 eeaaeeakekkkkkkrqrakkpkekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqC 222 ++ +a ++k++kk++++++p+++ + +k+kk++ ++k+v ++++ ++ +k+e+k+++l+ln+v++D+st+P+P+CsCtG+lrqC BGIOSGA022010-PA 103 LNSSRSAGKAKRPKKNSSQASPLKRPSGvlRKTKKPSGDWKNVGMSGCGDDsahasvMKNEWKDQNLGLNQVAFDDSTMPAPACSCTGKLRQC 195 5567788999**************999988888889**********99855589999************************************ PP GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 YkWGnGGWqS+CCt++iS+yPLPv++++r+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWAkHGtn+++tir BGIOSGA022010-PA 196 YKWGNGGWQSSCCTMNISMYPLPVMPNKRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 274 ******************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.4E-156 | 1 | 274 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.3E-85 | 1 | 274 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MDNLGHRENG RQRPDQYKGL HTQWMMPQTQ RHLKDHQSMN LLALMNDRDN AIRERDHALA 60 EKKAAIAERD MAFTQRDAAM AERNAAVVER DNALAALESI PYLNSSRSAG KAKRPKKNSS 120 QASPLKRPSG VLRKTKKPSG DWKNVGMSGC GDDSAHASVM KNEWKDQNLG LNQVAFDDST 180 MPAPACSCTG KLRQCYKWGN GGWQSSCCTM NISMYPLPVM PNKRHARMGG RKMSGGAFTK 240 LLSRLAAEGH DLSTPVDLKD HWAKHGTNRY ITIR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10575 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980640 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070616 | 0.0 | AK070616.1 Oryza sativa Japonica Group cDNA clone:J023060O20, full insert sequence. | |||
GenBank | AP000559 | 0.0 | AP000559.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0493C11. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY957504 | 0.0 | AY957504.1 Oryza sativa (japonica cultivar-group) barley B recombinant-like protein D gene, complete cds. | |||
GenBank | AY957505 | 0.0 | AY957505.1 Oryza sativa (japonica cultivar-group) barley B recombinant-like protein D mRNA, complete cds. | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964426.1 | 1e-167 | barley B recombinant-like protein D | ||||
Refseq | XP_004964427.1 | 1e-167 | barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 1e-168 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A2Y8V8 | 0.0 | A2Y8V8_ORYSI; Uncharacterized protein | ||||
STRING | OS06T0130600-01 | 1e-166 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 7e-90 | basic pentacysteine 4 |
Publications ? help Back to Top | |||
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