PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA017726-PA
Common NameOsI_20625
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 500aa    MW: 54807.8 Da    PI: 6.6261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA017726-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.91.6e-26201573128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.at 86 
                       +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +        ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +t
  BGIOSGA017726-PA  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVGGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaST 112
                       7************************7666779999**********733455532233777********************887679****546 PP

               NAM  87 gk...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       gk   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  BGIOSGA017726-PA 113 GKtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                       664435678777888999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.27218198IPR003441NAC domain
SuperFamilySSF1019418.24E-2919198IPR003441NAC domain
PfamPF023657.8E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE  60
PERLINEKCN GGVGGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQLKSS  180
LFLQRQLDQY VLCRIYTSPK KGADDGEQAE VVRGGGGEDI DEWAEACAVF DLGPETAEGS  240
DNADAAAAEG DMRSAKQAGK RPVAAAAVAE QPSKRPWLPP SPSTPCDGGP SQAMGNRQVP  300
MQGLSLMHNF PPPPTTFCGH APLQQGFPVH NNRAQMRWPT MQHNCMPSPA HSFQPRPVQR  360
RPVLVGQAPP QRRPVHHVGG HAPMHMHQAQ WTPVHIAQAP MQQLPFDDWV FDPFDDPPPP  420
MQQLPVMMNN YQPQAPMQLP PMMNNDQPAM VHGGELQAPM QLLPATTHGG EVQAPMPLNV  480
YEEEQRPSQE DGGQCTNAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-152119620163NO APICAL MERISTEM PROTEIN
1ut4_B4e-152119620163NO APICAL MERISTEM PROTEIN
1ut7_A4e-152119620163NO APICAL MERISTEM PROTEIN
1ut7_B4e-152119620163NO APICAL MERISTEM PROTEIN
3ulx_A5e-152119818168Stress-induced transcription factor NAC1
4dul_A4e-152119620163NAC domain-containing protein 19
4dul_B4e-152119620163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-179pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLA2Y6I50.0A2Y6I5_ORYSI; Uncharacterized protein
STRINGONIVA05G23670.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-18NAC domain containing protein 25