PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013800-PA
Common NameOsI_14022
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 313aa    MW: 33424.1 Da    PI: 6.0756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013800-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-0868160354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC............................................TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkas.........................................kapskKlsKaeiLekAveYIksL 54 
                       r+h e+E+rRR+ri+s +++Lr +l  ++                                         +      +Ka+ L kAve +++L
  BGIOSGA013800-PA  68 RNHREAEKRRRERIKSHLDRLRAVLACDPkaihayttnyfplnflqklilfyqildqfktkelrgfdcvlRFELDEIDKASLLAKAVERVRDL 160
                       78*************************766999999999999999999999999999999999999999877777899999999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.89965160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.25E-86797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-96898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-668160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.25E-8142164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9143163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MFPVEVAAAA AAAGRMQGEA VVPMMLPPFF MDSGIWPAAA GVVDVAASAE EEAAAAAAAQ  60
DRALAASRNH REAEKRRRER IKSHLDRLRA VLACDPKAIH AYTTNYFPLN FLQKLILFYQ  120
ILDQFKTKEL RGFDCVLRFE LDEIDKASLL AKAVERVRDL KQRMAGIGEA APAHLFPTEH  180
DEIVVLASGG GGVGGAGGAA AVFEASVCCD DRSDLLPELI ETLRALRLRT LRAEMATLGG  240
RVRNVLVLAR DAGGAGEGGD GDDDRAGYSA VSNDGGDFLK EALRALVERP GAAAGDRPKR  300
RRVVSDMNMQ AAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298302KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.800691e-161leaf| panicle| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629146.11e-95transcription factor bHLH106
TrEMBLB8AMC00.0B8AMC0_ORYSI; Uncharacterized protein
STRINGOPUNC03G35590.11e-108(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-13bHLH family protein