PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA013499-PA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRF | ||||||||
Protein Properties | Length: 971aa MW: 102328 Da PI: 8.3481 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.5e-24 | 223 | 267 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e BGIOSGA013499-PA 223 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 267 79****************************************986 PP | |||||||
2 | QLQ | 56.6 | 8e-20 | 157 | 193 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ BGIOSGA013499-PA 157 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 193 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 157 | 193 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.8E-14 | 158 | 192 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.087 | 158 | 193 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 223 | 267 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.9E-20 | 224 | 266 | IPR014977 | WRC domain |
Gene3D | G3DSA:3.40.1280.10 | 4.0E-59 | 739 | 962 | IPR029026 | tRNA (guanine-N1-)-methyltransferase, N-terminal |
SuperFamily | SSF88697 | 3.23E-10 | 740 | 794 | IPR015947 | PUA-like domain |
TIGRFAMs | TIGR00046 | 4.9E-35 | 742 | 957 | IPR006700 | Ribosomal RNA small subunit methyltransferase E |
Pfam | PF04452 | 1.6E-46 | 744 | 957 | IPR006700 | Ribosomal RNA small subunit methyltransferase E |
SuperFamily | SSF75217 | 4.5E-33 | 807 | 960 | IPR029028 | Alpha/beta knot methyltransferases |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006364 | Biological Process | rRNA processing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008168 | Molecular Function | methyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 971 aa Download sequence Send to blast |
MDLGGGVGVV MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS 60 SAAXAVPAAA XVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA 120 AAGGAMPLYY GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN 180 SPVPHSLLIP IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS 240 RDAVADQKYC ERHMNRGRHR SRKHVEGQPG HAAKAMPAAV AAAAASATQP SAPAAHSGGA 300 VAGLAINHQH QQMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG 360 SLFPFSKQHN PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSSVSLQHF 420 VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE 480 YSPIGLGFAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LSESLNLLND 540 GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI 600 RLVAHREGRC GTRVPTALHV GPTIVVGPHC AVVRIRAPPP PQQHDPFLAA YVACTKGRAC 660 AGNNKKKKKA KAAARGGCGM WNGWASGARY ARVMSCRHGG AVTVLQGATP LPAVAGYAES 720 PAHPTLDLSR LPAVLPGRRR GEEVRIQGDE FWHMTRVLRL GINDRVELFD GAGGLVEGSI 780 QKVDKGGSDV KLLEDARLIA PDGIQWHGTL KGGRADWLVE KCTELGACSV TPLLTERCHT 840 VAENRVDRLQ RLVLAAVKQC QRIHGMLLNP PIQIADLQPV VSQSKLAFVA SAESPPLLST 900 LPKSCNEESG LLIVGPEGDF TEEEVNVLKA SGAVPVGLGP CRLRVETATI SLLSALMLWS 960 DAHRQETLKC R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1v6z_A | 2e-15 | 750 | 947 | 19 | 213 | hypothetical protein TTHA0657 |
1v6z_B | 2e-15 | 750 | 947 | 19 | 213 | hypothetical protein TTHA0657 |
2cx8_A | 2e-15 | 750 | 947 | 19 | 213 | methyl transferase |
2cx8_B | 2e-15 | 750 | 947 | 19 | 213 | methyl transferase |
2z0y_A | 2e-15 | 750 | 947 | 19 | 213 | Putative uncharacterized protein TTHA0657 |
2z0y_B | 2e-15 | 750 | 947 | 19 | 213 | Putative uncharacterized protein TTHA0657 |
5o95_A | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o95_B | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o95_C | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o95_D | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_A | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_B | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_C | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_D | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_E | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_F | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_G | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
5o96_H | 3e-15 | 736 | 956 | 12 | 238 | Ribosomal RNA small subunit methyltransferase E |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49751 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983601 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073578 | 0.0 | AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628630.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0E0P0T7 | 0.0 | A0A0E0P0T7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI03G34250.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 2e-51 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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