PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA011170-PA
Common NameOsI_10636
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 639aa    MW: 68286.9 Da    PI: 6.7756
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA011170-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.3e-12290346155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++t+++Aa+a++ a++k++g
  BGIOSGA011170-PA 290 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 346
                       78*******************88888885446656.77***99*************97 PP
2AP246.87.1e-15389440155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  BGIOSGA011170-PA 389 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 440
                       57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-14290356IPR016177DNA-binding domain
CDDcd000188.48E-18290354No hitNo description
PfamPF008471.4E-9290346IPR001471AP2/ERF domain
SMARTSM003802.1E-21291360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-12291355IPR001471AP2/ERF domain
PROSITE profilePS5103217.662291354IPR001471AP2/ERF domain
PRINTSPR003674.8E-6292303IPR001471AP2/ERF domain
CDDcd000181.00E-23389450No hitNo description
SuperFamilySSF541711.44E-17389449IPR016177DNA-binding domain
PfamPF008478.8E-10389440IPR001471AP2/ERF domain
SMARTSM003801.3E-33390454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-18390448IPR001471AP2/ERF domain
PROSITE profilePS5103219.045390448IPR001471AP2/ERF domain
PRINTSPR003674.8E-6430450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MASGGGSSNW LGFSLSPHMP AMEVPSSSEP STAAHHHHHH HPPAAAAAAG AMSSPPDSAT  60
TCNFLFSPPA AQMVAPSPGY YYVGGAYGDG TSTAGVYYSH LPVMPIKSDG SLCIMEGMMP  120
SSSPKLEDFL GCGNGSGHDP ATYYSQGQEA EDASRAAYQH HQLVPYNYQP LTEAEMLQEA  180
AAAPMEDAMA AAKNFLVTSY GACYGNQEMP QPLSLSMSPG SQSSSCVSAA PQQHQQMAVV  240
AAAAAAGDGQ GSNSNDGGEQ RVGKKRGTGK GGQKQPVHRK SIDTFGQRTS QYRGVTRHRW  300
TGRYEAHLWD NSCKKDGQTR KGRQGGYDTE DKAARAYDLA ALKYWGLSTH INFPLENYRD  360
EIEEMERMTR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  420
FSTQEEAAEA YDIAAIKFRG LNAVTNFDIT RYDVDKIMES SSLLPGEAAR KVKAIEAAPD  480
HVPIGRELGA TEEASAATVT GTDWRMVLHG SQQQQAAACT EATADLQKGF MGDAHSALHG  540
IVGFDVESAA ADEIDVPGGK ISGINFSNSS SLVTSLSNSR EGSPERLGLA MLYAKHHPTA  600
VSLAAMNPWM PMPAPAAAHV MRPPSAIAHL PVFAAWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.546290.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329915150.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629410.10.0AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-146CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLB8AJM50.0B8AJM5_ORYSI; Uncharacterized protein
STRINGORUFI03G09610.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-103AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]